RNA–Protein interactions for RNA: ENST00000414220.2

CHD1-202, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 5

Gene CHD1, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-202ENST00000414220 AHCYL1O43865 530 aa12.84□□□□□ -0.35
CHD1-202ENST00000414220 CD14P08571 375 aa12.84□□□□□ -0.35
CHD1-202ENST00000414220 RAP2AP10114 183 aa12.84□□□□□ -0.35
CHD1-202ENST00000414220 NPR2P20594 1047 aa12.84□□□□□ -0.35
CHD1-202ENST00000414220 OMPP47874 163 aa12.84□□□□□ -0.35
CHD1-202ENST00000414220 RPS6KA3P51812 740 aa12.84□□□□□ -0.35
CHD1-202ENST00000414220 LSM11P83369 360 aaKnown RBP eCLIP12.84□□□□□ -0.35
CHD1-202ENST00000414220 MS4A2Q01362 244 aa12.84□□□□□ -0.35
CHD1-202ENST00000414220 BNIP1Q12981 228 aa12.84□□□□□ -0.35
CHD1-202ENST00000414220 FLOT2Q14254 428 aa12.84□□□□□ -0.35
CHD1-202ENST00000414220 GK3PQ14409 553 aa12.84□□□□□ -0.35
CHD1-202ENST00000414220 GSG1Q2KHT4 349 aa12.84□□□□□ -0.35
CHD1-202ENST00000414220 SLC36A2Q495M3 483 aa12.84□□□□□ -0.35
CHD1-202ENST00000414220 ARMC4Q5T2S8 1044 aa12.84□□□□□ -0.35
CHD1-202ENST00000414220 GPR139Q6DWJ6 353 aa12.84□□□□□ -0.35
CHD1-202ENST00000414220 SLC22A24Q8N4F4 322 aa12.84□□□□□ -0.35
CHD1-202ENST00000414220 GNPDA2Q8TDQ7 276 aa12.84□□□□□ -0.35
CHD1-202ENST00000414220 GTPBP3Q969Y2 492 aaKnown RBP12.84□□□□□ -0.35
CHD1-202ENST00000414220 ZNF837Q96EG3 531 aaPredicted RBP12.84□□□□□ -0.35
CHD1-202ENST00000414220 TRMT61AQ96FX7 289 aaKnown RBP12.84□□□□□ -0.35
CHD1-202ENST00000414220 RSRC1Q96IZ7 334 aaKnown RBP12.84□□□□□ -0.35
CHD1-202ENST00000414220 CLPTM1LQ96KA5 538 aa12.84□□□□□ -0.35
CHD1-202ENST00000414220 DHRS9Q9BPW9 319 aa12.84□□□□□ -0.35
CHD1-202ENST00000414220 MRPL13Q9BYD1 178 aaKnown RBP12.84□□□□□ -0.35
CHD1-202ENST00000414220 MMADHCQ9H3L0 296 aaPredicted RBP12.84□□□□□ -0.35
CHD1-202ENST00000414220 CRNNQ9UBG3 495 aaPredicted RBP12.84□□□□□ -0.35
CHD1-202ENST00000414220 LAMP3Q9UQV4 416 aa12.84□□□□□ -0.35
CHD1-202ENST00000414220 ABCA4P78363 2273 aa12.84□□□□□ -0.35
CHD1-202ENST00000414220 TCRBV5S2A0A599 114 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 GNGT2O14610 69 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 SEC14L2O76054 403 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 PTHP01270 115 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 B4GALT1P15291 398 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 FUT4P22083 530 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 MAGEA2P43356 314 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 FABP6P51161 128 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 HMGA2P52926 109 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 NPRL3Q12980 569 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 HIST3H3Q16695 136 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 IQCCQ4KMZ1 466 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 ZNF544Q6NX49 715 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 TMEM53Q6P2H8 277 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 LRFN4Q6PJG9 635 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 SMARCD3Q6STE5 483 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 DPY19L2P2Q6ZN68 376 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 IGFN1Q86VF2 1251 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 SPATA24Q86W54 205 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 MEX3DQ86XN8 651 aaKnown RBP12.83□□□□□ -0.36
CHD1-202ENST00000414220 ARIH2OSQ8N7S6 290 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 OR4F15Q8NGB8 312 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 ZNF570Q96NI8 536 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 NELFAQ9H3P2 528 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 RNF121Q9H920 327 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 TMEM38BQ9NVV0 291 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 SPEF1Q9Y4P9 236 aa12.83□□□□□ -0.36
CHD1-202ENST00000414220 IGHV1-18A0A0C4DH31 117 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 SHISA9B4DS77 424 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 CDC42EP2O14613 210 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 GSC2O15499 205 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 PTP4A3O75365 173 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 CCNB2O95067 398 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 IGKV3-15P01624 115 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 FPR3P25089 353 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 SLC6A6P31641 620 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 LIMS1P48059 325 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 PTDSS1P48651 473 aaKnown RBP12.82□□□□□ -0.36
CHD1-202ENST00000414220 IDH3GP51553 393 aaPredicted RBP12.82□□□□□ -0.36
CHD1-202ENST00000414220 RAB1AP62820 205 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 ERVK-25P63136 954 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 TUBA1BP68363 451 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 TUBA4AP68366 448 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 NKX6-1P78426 367 aaPredicted RBP12.82□□□□□ -0.36
CHD1-202ENST00000414220 MYBPC1Q00872 1141 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 PLP2Q04941 152 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 SEC23BQ15437 767 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 C10orf128Q5T292 105 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 SHEQ5VZ18 495 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 OR2T5Q6IEZ7 315 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 RPL13AP3Q6NVV1 102 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 SPNS3Q6ZMD2 512 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 TUBA1AQ71U36 451 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 SLC16A14Q7RTX9 510 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 MDP1Q86V88 176 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 LRRC75AQ8NAA5 344 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 OR2T29Q8NH02 315 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 LILRB1Q8NHL6 650 aaPredicted RBP12.82□□□□□ -0.36
CHD1-202ENST00000414220 HDAC2Q92769 488 aaKnown RBP12.82□□□□□ -0.36
CHD1-202ENST00000414220 SLC7A6OSQ96CW6 309 aaPredicted RBP12.82□□□□□ -0.36
CHD1-202ENST00000414220 TSPAN32Q96QS1 320 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 KCNK17Q96T54 332 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 CXXC4Q9H2H0 198 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 MOKQ9UQ07 419 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 SIGLEC7Q9Y286 467 aa12.82□□□□□ -0.36
CHD1-202ENST00000414220 SAMHD1Q9Y3Z3 626 aaKnown RBP12.82□□□□□ -0.36
CHD1-202ENST00000414220 DHRS12A0PJE2 317 aa12.81□□□□□ -0.36
CHD1-202ENST00000414220 ACOT8O14734 319 aa12.81□□□□□ -0.36
CHD1-202ENST00000414220 CST1P01037 141 aa12.81□□□□□ -0.36
CHD1-202ENST00000414220 IGLV1-44P01699 117 aa12.81□□□□□ -0.36
CHD1-202ENST00000414220 HLA-HP01893 362 aa12.81□□□□□ -0.36
CHD1-202ENST00000414220 SDHAP31040 664 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms