RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 NSRP1Q9H0G5 558 aaKnown RBP16.49■□□□□ 0.23
SF3A1-202ENST00000411423 BARX1Q9HBU1 254 aaPredicted RBP16.49■□□□□ 0.23
SF3A1-202ENST00000411423 TMEM38BQ9NVV0 291 aa16.49■□□□□ 0.23
SF3A1-202ENST00000411423 HIF3AQ9Y2N7 669 aa16.49■□□□□ 0.23
SF3A1-202ENST00000411423 TMEM129A0AVI4 362 aa16.48■□□□□ 0.23
SF3A1-202ENST00000411423 OR4A8P0C604 315 aa16.48■□□□□ 0.23
SF3A1-202ENST00000411423 ZNF35P13682 527 aa16.48■□□□□ 0.23
SF3A1-202ENST00000411423 ACADSP16219 412 aa16.48■□□□□ 0.23
SF3A1-202ENST00000411423 ZNF26P17031 533 aaPredicted RBP16.48■□□□□ 0.23
SF3A1-202ENST00000411423 SERPINF1P36955 418 aa16.48■□□□□ 0.23
SF3A1-202ENST00000411423 GIPRP48546 466 aa16.48■□□□□ 0.23
SF3A1-202ENST00000411423 PTDSS1P48651 473 aaKnown RBP16.48■□□□□ 0.23
SF3A1-202ENST00000411423 TRAM2Q15035 370 aa16.48■□□□□ 0.23
SF3A1-202ENST00000411423 RAB35Q15286 201 aa16.48■□□□□ 0.23
SF3A1-202ENST00000411423 GLYATQ6IB77 296 aa16.48■□□□□ 0.23
SF3A1-202ENST00000411423 FKBP9P1Q75LS8 142 aa16.48■□□□□ 0.23
SF3A1-202ENST00000411423 SLC22A24Q8N4F4 322 aa16.48■□□□□ 0.23
SF3A1-202ENST00000411423 CLDN22Q8N7P3 220 aa16.48■□□□□ 0.23
SF3A1-202ENST00000411423 FNDC11Q9BVV2 318 aa16.48■□□□□ 0.23
SF3A1-202ENST00000411423 SPAG4Q9NPE6 437 aa16.48■□□□□ 0.23
SF3A1-202ENST00000411423 TRAV27A0A087WT01 109 aa16.47■□□□□ 0.23
SF3A1-202ENST00000411423 A0A1W2PRG6 482 aa16.47■□□□□ 0.23
SF3A1-202ENST00000411423 CDC42EP2O14613 210 aa16.47■□□□□ 0.23
SF3A1-202ENST00000411423 SLC2A10O95528 541 aa16.47■□□□□ 0.23
SF3A1-202ENST00000411423 IGHG1P01857 330 aa16.47■□□□□ 0.23
SF3A1-202ENST00000411423 MSX2P35548 267 aaPredicted RBP16.47■□□□□ 0.23
SF3A1-202ENST00000411423 ZNF133P52736 654 aaPredicted RBP16.47■□□□□ 0.23
SF3A1-202ENST00000411423 CLRN1P58418 232 aa16.47■□□□□ 0.23
SF3A1-202ENST00000411423 RAB1AP62820 205 aa16.47■□□□□ 0.23
SF3A1-202ENST00000411423 PRKCDQ05655 676 aa16.47■□□□□ 0.23
SF3A1-202ENST00000411423 FMODQ06828 376 aa16.47■□□□□ 0.23
SF3A1-202ENST00000411423 RAB39AQ14964 217 aa16.47■□□□□ 0.23
SF3A1-202ENST00000411423 IQCCQ4KMZ1 466 aa16.47■□□□□ 0.23
SF3A1-202ENST00000411423 KRT80Q6KB66 452 aa16.47■□□□□ 0.23
SF3A1-202ENST00000411423 PIWIL3Q7Z3Z3 882 aaKnown RBP16.47■□□□□ 0.23
SF3A1-202ENST00000411423 ANKS4BQ8N8V4 417 aa16.47■□□□□ 0.23
SF3A1-202ENST00000411423 OR4F15Q8NGB8 312 aa16.47■□□□□ 0.23
SF3A1-202ENST00000411423 OR13C2Q8NGS9 318 aa16.47■□□□□ 0.23
SF3A1-202ENST00000411423 C7orf34Q96L11 122 aa16.47■□□□□ 0.23
SF3A1-202ENST00000411423 PLK3Q9H4B4 646 aa16.47■□□□□ 0.23
SF3A1-202ENST00000411423 MOV10Q9HCE1 1003 aaKnown RBP16.47■□□□□ 0.23
SF3A1-202ENST00000411423 ADA2Q9NZK5 511 aa16.47■□□□□ 0.23
SF3A1-202ENST00000411423 ZNF346Q9UL40 294 aaKnown RBP16.47■□□□□ 0.23
SF3A1-202ENST00000411423 UGT2A1Q9Y4X1 527 aa16.47■□□□□ 0.23
SF3A1-202ENST00000411423 ENPP4Q9Y6X5 453 aa16.47■□□□□ 0.23
SF3A1-202ENST00000411423 FAM171A2A8MVW0 826 aa16.46■□□□□ 0.23
SF3A1-202ENST00000411423 MCIDASD6RGH6 385 aa16.46■□□□□ 0.23
SF3A1-202ENST00000411423 GPRIN2O60269 458 aa16.46■□□□□ 0.23
SF3A1-202ENST00000411423 TCN1P20061 433 aaPredicted RBP16.46■□□□□ 0.23
SF3A1-202ENST00000411423 GPR4P46093 362 aa16.46■□□□□ 0.23
SF3A1-202ENST00000411423 CHRNB3Q05901 458 aa16.46■□□□□ 0.23
SF3A1-202ENST00000411423 SNTB2Q13425 540 aaKnown RBP16.46■□□□□ 0.23
SF3A1-202ENST00000411423 TOP3AQ13472 1001 aaPredicted RBP16.46■□□□□ 0.23
SF3A1-202ENST00000411423 EFNB3Q15768 340 aa16.46■□□□□ 0.23
SF3A1-202ENST00000411423 FXNQ16595 210 aa16.46■□□□□ 0.23
SF3A1-202ENST00000411423 ALG10Q5BKT4 473 aa16.46■□□□□ 0.23
SF3A1-202ENST00000411423 ZCCHC24Q8N2G6 241 aaKnown RBP16.46■□□□□ 0.23
SF3A1-202ENST00000411423 OR4K5Q8NGD3 323 aa16.46■□□□□ 0.23
SF3A1-202ENST00000411423 OR51A7Q8NH64 312 aa16.46■□□□□ 0.23
SF3A1-202ENST00000411423 ACOT11Q8WXI4 607 aaPredicted RBP16.46■□□□□ 0.23
SF3A1-202ENST00000411423 TNFRSF13CQ96RJ3 184 aa16.46■□□□□ 0.23
SF3A1-202ENST00000411423 TXNIPQ9H3M7 391 aa16.46■□□□□ 0.23
SF3A1-202ENST00000411423 ZNF442Q9H7R0 627 aa16.46■□□□□ 0.23
SF3A1-202ENST00000411423 DCAF13Q9NV06 445 aaKnown RBP16.46■□□□□ 0.23
SF3A1-202ENST00000411423 NDUFAF4Q9P032 175 aa16.46■□□□□ 0.23
SF3A1-202ENST00000411423 CD300AQ9UGN4 299 aa16.46■□□□□ 0.23
SF3A1-202ENST00000411423 ARL2BPQ9Y2Y0 163 aa16.46■□□□□ 0.23
SF3A1-202ENST00000411423 CSPG4Q6UVK1 2322 aa16.45■□□□□ 0.22
SF3A1-202ENST00000411423 INAFM1C9JVW0 142 aa16.45■□□□□ 0.22
SF3A1-202ENST00000411423 PDE5AO76074 875 aa16.45■□□□□ 0.22
SF3A1-202ENST00000411423 DIRAS1O95057 198 aa16.45■□□□□ 0.22
SF3A1-202ENST00000411423 UBL3O95164 117 aa16.45■□□□□ 0.22
SF3A1-202ENST00000411423 SEMG1P04279 462 aa16.45■□□□□ 0.22
SF3A1-202ENST00000411423 NR4A1P22736 598 aa16.45■□□□□ 0.22
SF3A1-202ENST00000411423 PCSK6P29122 969 aa16.45■□□□□ 0.22
SF3A1-202ENST00000411423 CDAP32320 146 aa16.45■□□□□ 0.22
SF3A1-202ENST00000411423 DAP3P51398 398 aaKnown RBP16.45■□□□□ 0.22
SF3A1-202ENST00000411423 EFNA4P52798 201 aa16.45■□□□□ 0.22
SF3A1-202ENST00000411423 VLDLRP98155 873 aa16.45■□□□□ 0.22
SF3A1-202ENST00000411423 C10orf128Q5T292 105 aa16.45■□□□□ 0.22
SF3A1-202ENST00000411423 MBOAT2Q6ZWT7 520 aa16.45■□□□□ 0.22
SF3A1-202ENST00000411423 CDK20Q8IZL9 346 aa16.45■□□□□ 0.22
SF3A1-202ENST00000411423 SVOPLQ8N434 492 aa16.45■□□□□ 0.22
SF3A1-202ENST00000411423 PAQR4Q8N4S7 273 aaPredicted RBP16.45■□□□□ 0.22
SF3A1-202ENST00000411423 SLC7A13Q8TCU3 470 aa16.45■□□□□ 0.22
SF3A1-202ENST00000411423 NABP1Q96AH0 204 aa16.45■□□□□ 0.22
SF3A1-202ENST00000411423 TSPAN32Q96QS1 320 aa16.45■□□□□ 0.22
SF3A1-202ENST00000411423 KCNK17Q96T54 332 aa16.45■□□□□ 0.22
SF3A1-202ENST00000411423 DOK1Q99704 481 aa16.45■□□□□ 0.22
SF3A1-202ENST00000411423 NMNAT1Q9HAN9 279 aaPredicted RBP16.45■□□□□ 0.22
SF3A1-202ENST00000411423 TAGLN3Q9UI15 199 aa16.45■□□□□ 0.22
SF3A1-202ENST00000411423 PMF1-BGLAPU3KQ54 211 aa16.45■□□□□ 0.22
SF3A1-202ENST00000411423 V9GYQ6 96 aa16.45■□□□□ 0.22
SF3A1-202ENST00000411423 NPIPB13A6NJU9 1138 aa16.44■□□□□ 0.22
SF3A1-202ENST00000411423 B9A039 149 aa16.44■□□□□ 0.22
SF3A1-202ENST00000411423 NPIPB4C9JG80 1138 aa16.44■□□□□ 0.22
SF3A1-202ENST00000411423 hCG_2039718K7EN88 272 aa16.44■□□□□ 0.22
SF3A1-202ENST00000411423 NDUFAB1O14561 156 aa16.44■□□□□ 0.22
SF3A1-202ENST00000411423 F12P00748 615 aaPredicted RBP16.44■□□□□ 0.22
SF3A1-202ENST00000411423 IGHMP01871 453 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms