RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 HAO2Q9NYQ3 351 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 ZNF337Q9Y3M9 751 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 SMG1Q96Q15 3661 aaKnown RBP9.14□□□□□ -0.95
VPS53-202ENST00000389040 IGKV1D-42A0A075B6H8 117 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 HTR3EA5X5Y0 456 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 FIGNL2A6NMB9 653 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 MCIDASD6RGH6 385 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 LRRN3E7EW58 273 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 LOC110117498-PIK3R3F6TDL0 507 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 RGS5O15539 181 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 CDC40O60508 579 aaKnown RBP eCLIP9.13□□□□□ -0.95
VPS53-202ENST00000389040 SLC19A2O60779 497 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 WDR1O75083 606 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 OR7A10O76100 309 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 IGF2P01344 180 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 HLA-DPB1P04440 258 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 MRPL3P09001 348 aaKnown RBP9.13□□□□□ -0.95
VPS53-202ENST00000389040 SBK2P0C263 348 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 CLEC2LP0C7M8 214 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 CLUP10909 449 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 TNFSF8P32971 234 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 SDC2P34741 201 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 TGM4P49221 684 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 BCAP31P51572 246 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 RAC1P63000 192 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 DBPQ10586 325 aaPredicted RBP9.13□□□□□ -0.95
VPS53-202ENST00000389040 HNRNPA0Q13151 305 aaKnown RBP9.13□□□□□ -0.95
VPS53-202ENST00000389040 GALEQ14376 348 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 STEAP3Q658P3 488 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 MTFR2Q6P444 385 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 DPY19L2P2Q6ZN68 376 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 GRINAQ7Z429 371 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 ATG4DQ86TL0 474 aaPredicted RBP9.13□□□□□ -0.95
VPS53-202ENST00000389040 SYT14Q8NB59 555 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 DRAXINQ8NBI3 349 aaPredicted RBP9.13□□□□□ -0.95
VPS53-202ENST00000389040 OR52E2Q8NGJ4 325 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 SFXN2Q96NB2 322 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 TBX5Q99593 518 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 TIMP4Q99727 224 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 PRDM14Q9GZV8 571 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 C12orf10Q9HB07 376 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 POLE4Q9NR33 117 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 ASB6Q9NWX5 421 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 BABAM2Q9NXR7 383 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 KLHL21Q9UJP4 597 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 A0A1B0GTH9 108 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 A0A1B0GUH1 482 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 GAAP10253 952 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 GP1BBP13224 206 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 HIST1H1CP16403 213 aaKnown RBP9.13□□□□□ -0.95
VPS53-202ENST00000389040 ABOP16442 354 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 PRKCAP17252 672 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 GTF2E2P29084 291 aaKnown RBP9.13□□□□□ -0.95
VPS53-202ENST00000389040 RPL4P36578 427 aaKnown RBP9.13□□□□□ -0.95
VPS53-202ENST00000389040 RANBP1P43487 201 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 RPS4XP62701 263 aaKnown RBP9.13□□□□□ -0.95
VPS53-202ENST00000389040 ACTC1P68032 377 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 ACTA1P68133 377 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 POU4F2Q12837 409 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 GPR50Q13585 617 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 QPRTQ15274 297 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 WIPI1Q5MNZ9 446 aaPredicted RBP9.13□□□□□ -0.95
VPS53-202ENST00000389040 RAET1LQ5VY80 246 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 ARSKQ6UWY0 536 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 YRDCQ86U90 279 aaKnown RBP9.13□□□□□ -0.95
VPS53-202ENST00000389040 SDR9C7Q8NEX9 313 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 OR4K13Q8NH42 304 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 ZPLD1Q8TCW7 415 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 SLC25A43Q8WUT9 341 aaPredicted RBP9.13□□□□□ -0.95
VPS53-202ENST00000389040 SMPDL3BQ92485 455 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 AP3S1Q92572 193 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 WDFY2Q96P53 400 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 UCN2Q96RP3 112 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 TMEM43Q9BTV4 400 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 KATNB1Q9BVA0 655 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 TP63Q9H3D4 680 aaPredicted RBP9.13□□□□□ -0.95
VPS53-202ENST00000389040 TRIM36Q9NQ86 728 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 CMAHPQ9Y471 501 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 IER3IP1Q9Y5U9 82 aa9.13□□□□□ -0.95
VPS53-202ENST00000389040 B4DXG7 233 aa9.12□□□□□ -0.95
VPS53-202ENST00000389040 GABRPO00591 440 aa9.12□□□□□ -0.95
VPS53-202ENST00000389040 RNF13O43567 381 aa9.12□□□□□ -0.95
VPS53-202ENST00000389040 MT-ND5P03915 603 aa9.12□□□□□ -0.95
VPS53-202ENST00000389040 GYPBP06028 91 aa9.12□□□□□ -0.95
VPS53-202ENST00000389040 HNRNPCP07910 306 aaKnown RBP eCLIP9.12□□□□□ -0.951e-6■■□□□ 11.4
VPS53-202ENST00000389040 CELA3AP09093 270 aa9.12□□□□□ -0.95
VPS53-202ENST00000389040 GALP22466 123 aa9.12□□□□□ -0.95
VPS53-202ENST00000389040 B3GALT5-AS1P59052 145 aa9.12□□□□□ -0.95
VPS53-202ENST00000389040 PRPS1P60891 318 aa9.12□□□□□ -0.95
VPS53-202ENST00000389040 GXYLT1Q4G148 440 aa9.12□□□□□ -0.95
VPS53-202ENST00000389040 LAX1Q8IWV1 398 aa9.12□□□□□ -0.95
VPS53-202ENST00000389040 CFAP46Q8IYW2 2715 aa9.12□□□□□ -0.95
VPS53-202ENST00000389040 ZNF563Q8TA94 476 aa9.12□□□□□ -0.95
VPS53-202ENST00000389040 RELTQ969Z4 430 aa9.12□□□□□ -0.95
VPS53-202ENST00000389040 DCLRE1CQ96SD1 692 aaKnown RBP9.12□□□□□ -0.95
VPS53-202ENST00000389040 CCDC32Q9BV29 185 aa9.12□□□□□ -0.95
VPS53-202ENST00000389040 HDHD5Q9BXW7 423 aa9.12□□□□□ -0.95
VPS53-202ENST00000389040 ADAM19Q9H013 955 aa9.12□□□□□ -0.95
VPS53-202ENST00000389040 SP140LQ9H930 580 aa9.12□□□□□ -0.95
VPS53-202ENST00000389040 PLEKHB1Q9UF11 243 aaPredicted RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms