RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 LIPNQ5VXI9 398 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 C5orf46Q6UWT4 87 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 H2BFWTQ7Z2G1 175 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.12□□□□□ -1.11
LIG3-202ENST00000378526 CSNK1A1LQ8N752 337 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 SECTM1Q8WVN6 248 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 ZBTB45Q96K62 511 aaPredicted RBP8.12□□□□□ -1.11
LIG3-202ENST00000378526 SMOQ99835 787 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 DPH1Q9BZG8 443 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 OR2D2Q9H210 308 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 USP21Q9UK80 565 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 A0A1B0GV90 55 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 hCG_1809904A0A1W2PP81 198 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 A0A1W2PPE2 198 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 A0A1W2PR64 198 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 A0A1W2PRV1 198 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 ZNF487B1APH4 448 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 KLF7O75840 302 aaPredicted RBP8.12□□□□□ -1.11
LIG3-202ENST00000378526 NFATC1O95644 943 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 AOAHP28039 575 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 ABCD3P28288 659 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 CSNK1A1P48729 337 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 MBTPS1Q14703 1052 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 RIPPLY2Q5TAB7 128 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 KDM4DQ6B0I6 523 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 OR2L13Q8N349 312 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 SLC22A24Q8N4F4 322 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 KRTCAP2Q8N6L1 136 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 EDAQ92838 391 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 UQCR10Q9UDW1 63 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 KIAA1210Q9ULL0 1709 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 LCATP04180 440 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 BACE1P56817 501 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 GRM7Q14831 915 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 RTL8BQ17RB0 113 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 MAJINQ3KP22 176 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 TP53I3Q53FA7 332 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 FAM26EQ8N5C1 309 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 IL22RA2Q969J5 263 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 MENTQ9BUN1 341 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 ALOXE3Q9BYJ1 711 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 FZD1Q9UP38 647 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 PBRM1Q86U86 1689 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 RRP8O43159 456 aaKnown RBP8.12□□□□□ -1.11
LIG3-202ENST00000378526 KLK3P07288 261 aaPredicted RBP8.12□□□□□ -1.11
LIG3-202ENST00000378526 POU3F3P20264 500 aaPredicted RBP8.12□□□□□ -1.11
LIG3-202ENST00000378526 ARR3P36575 388 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 GTF2A2P52657 109 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 SQSTM1Q13501 440 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 FBXO16Q8IX29 292 aaPredicted RBP8.12□□□□□ -1.11
LIG3-202ENST00000378526 KCNQ2O43526 872 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 TSPAN12O95859 305 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 CTSOP43234 321 aaPredicted RBP8.12□□□□□ -1.11
LIG3-202ENST00000378526 OR8G1Q15617 311 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 TMEM241Q24JQ0 296 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 AGTRAPQ6RW13 159 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 NLGN4YQ8NFZ3 816 aaPredicted RBP8.12□□□□□ -1.11
LIG3-202ENST00000378526 UCN3Q969E3 161 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 IER2Q9BTL4 223 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 Q9N2K0 584 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 INIPQ9NRY2 104 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 NDUFB11Q9NX14 153 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 ZFP30Q9Y2G7 519 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 CACNA1DQ01668 2161 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 YIF1AO95070 293 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 AKR7A3O95154 331 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 FPR3P25089 353 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 AHRP35869 848 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 CDC34P49427 236 aaPredicted RBP8.12□□□□□ -1.11
LIG3-202ENST00000378526 GABREP78334 506 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 SEZ6L2Q6UXD5 910 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 CERKQ8TCT0 537 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 RXFP4Q8TDU9 374 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 RELTQ969Z4 430 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 OR1F2PQ96R84 312 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 SIX2Q9NPC8 291 aa8.12□□□□□ -1.11
LIG3-202ENST00000378526 I6L893 689 aaPredicted RBP8.11□□□□□ -1.11
LIG3-202ENST00000378526 KLRB1Q12918 225 aa8.11□□□□□ -1.11
LIG3-202ENST00000378526 CCL15Q16663 113 aa8.11□□□□□ -1.11
LIG3-202ENST00000378526 TEX30Q5JUR7 227 aa8.11□□□□□ -1.11
LIG3-202ENST00000378526 TMEM164Q5U3C3 297 aa8.11□□□□□ -1.11
LIG3-202ENST00000378526 TMEM268Q5VZI3 342 aa8.11□□□□□ -1.11
LIG3-202ENST00000378526 LCTLQ6UWM7 567 aa8.11□□□□□ -1.11
LIG3-202ENST00000378526 BANF2Q9H503 90 aa8.11□□□□□ -1.11
LIG3-202ENST00000378526 TMEM231Q9H6L2 316 aa8.11□□□□□ -1.11
LIG3-202ENST00000378526 SERTAD3Q9UJW9 196 aa8.11□□□□□ -1.11
LIG3-202ENST00000378526 MRPS16Q9Y3D3 137 aaKnown RBP8.11□□□□□ -1.11
LIG3-202ENST00000378526 PMS2P1A4D2B8 440 aa8.11□□□□□ -1.11
LIG3-202ENST00000378526 FAM74A7A6NL05 159 aa8.11□□□□□ -1.11
LIG3-202ENST00000378526 SSSCA1O60232 199 aa8.11□□□□□ -1.11
LIG3-202ENST00000378526 GABRB1P18505 474 aa8.11□□□□□ -1.11
LIG3-202ENST00000378526 PAX5Q02548 391 aa8.11□□□□□ -1.11
LIG3-202ENST00000378526 TECRLQ5HYJ1 363 aa8.11□□□□□ -1.11
LIG3-202ENST00000378526 LINC00469Q8N7U9 141 aa8.11□□□□□ -1.11
LIG3-202ENST00000378526 OR5D13Q8NGL4 314 aa8.11□□□□□ -1.11
LIG3-202ENST00000378526 PMCHL2Q9BQD1 86 aa8.11□□□□□ -1.11
LIG3-202ENST00000378526 WDR18Q9BV38 432 aa8.11□□□□□ -1.11
LIG3-202ENST00000378526 OR1A2Q9Y585 309 aa8.11□□□□□ -1.11
LIG3-202ENST00000378526 SMAD6O43541 496 aaKnown RBP8.11□□□□□ -1.11
LIG3-202ENST00000378526 STBD1O95210 358 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms