RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 NKPD1Q17RQ9 610 aa11.01□□□□□ -0.65
CLIP3-201ENST00000360535 TMEM205Q6UW68 189 aa11.01□□□□□ -0.65
CLIP3-201ENST00000360535 SLC22A18ASQ8N1D0 253 aa11.01□□□□□ -0.65
CLIP3-201ENST00000360535 RAB40AQ8WXH6 277 aa11.01□□□□□ -0.65
CLIP3-201ENST00000360535 CCDC74AQ96AQ1 378 aa11.01□□□□□ -0.65
CLIP3-201ENST00000360535 RP2O75695 350 aa11.01□□□□□ -0.65
CLIP3-201ENST00000360535 NDUFB6O95139 128 aa11.01□□□□□ -0.65
CLIP3-201ENST00000360535 WISP1O95388 367 aa11.01□□□□□ -0.65
CLIP3-201ENST00000360535 IGF2P01344 180 aa11.01□□□□□ -0.65
CLIP3-201ENST00000360535 LPLP06858 475 aa11.01□□□□□ -0.65
CLIP3-201ENST00000360535 APEHP13798 732 aaKnown RBP11.01□□□□□ -0.65
CLIP3-201ENST00000360535 NUP62P37198 522 aaPredicted RBP11.01□□□□□ -0.65
CLIP3-201ENST00000360535 HLXQ14774 488 aaPredicted RBP11.01□□□□□ -0.65
CLIP3-201ENST00000360535 MESTQ5EB52 335 aa11.01□□□□□ -0.65
CLIP3-201ENST00000360535 FAM74A1Q5RGS3 127 aa11.01□□□□□ -0.65
CLIP3-201ENST00000360535 ZNF626Q68DY1 528 aa11.01□□□□□ -0.65
CLIP3-201ENST00000360535 LIN54Q6MZP7 749 aa11.01□□□□□ -0.65
CLIP3-201ENST00000360535 TMUB2Q71RG4 321 aa11.01□□□□□ -0.65
CLIP3-201ENST00000360535 RLN3Q8WXF3 142 aa11.01□□□□□ -0.65
CLIP3-201ENST00000360535 PTDSS2Q9BVG9 487 aa11.01□□□□□ -0.65
CLIP3-201ENST00000360535 TEX51A0A1B0GUA7 166 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 PLSCR5A0PG75 271 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 EFCAB7A8K855 629 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 FAM25EA8MYX2 175 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 XKRYO14609 159 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 ARPC3O15145 178 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 GLSO94925 669 aaPredicted RBP11□□□□□ -0.65
CLIP3-201ENST00000360535 RENP00797 406 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 S100A11P31949 105 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 MNDAP41218 407 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 FOXL2P58012 376 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 RAP2BP61225 183 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 SEC61A1P61619 476 aaKnown RBP11□□□□□ -0.65
CLIP3-201ENST00000360535 EXOSC6Q5RKV6 272 aaKnown RBP11□□□□□ -0.65
CLIP3-201ENST00000360535 FAM71CQ8NEG0 241 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 STK35Q8TDR2 534 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 GPR148Q8TDV2 347 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 TAAR8Q969N4 342 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 TSPAN32Q96QS1 320 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 LMF2Q9BU23 707 aaKnown RBP11□□□□□ -0.65
CLIP3-201ENST00000360535 NXF5Q9H1B4 397 aaKnown RBP11□□□□□ -0.65
CLIP3-201ENST00000360535 POLE3Q9NRF9 147 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 ATXN7L1Q9ULK2 861 aaPredicted RBP11□□□□□ -0.65
CLIP3-201ENST00000360535 CYP8B1Q9UNU6 501 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 TMEM184BQ9Y519 407 aaPredicted RBP11□□□□□ -0.65
CLIP3-201ENST00000360535 PCDH15Q96QU1 1955 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 OR5K3A6NET4 321 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 C5orf67F2Z3F1 127 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 FOXS1O43638 330 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 ITGA5P08648 1049 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 C4BPBP20851 252 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 MAPK3P27361 379 aaPredicted RBP11□□□□□ -0.65
CLIP3-201ENST00000360535 CTHP32929 405 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 FAUP35544 74 aaKnown RBP11□□□□□ -0.65
CLIP3-201ENST00000360535 ZNF141Q15928 474 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 C2orf76Q3KRA6 126 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 SLC35D3Q5M8T2 416 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 JAGN1Q8N5M9 183 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 RNF166Q96A37 237 aaPredicted RBP11□□□□□ -0.65
CLIP3-201ENST00000360535 NARS2Q96I59 477 aaKnown RBP11□□□□□ -0.65
CLIP3-201ENST00000360535 SEC22AQ96IW7 307 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 INTS14Q96SY0 518 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 MNTQ99583 582 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 NMNAT2Q9BZQ4 307 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 MMP25Q9NPA2 562 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 OBP2AQ9NY56 170 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 ZNF230Q9UIE0 474 aaPredicted RBP11□□□□□ -0.65
CLIP3-201ENST00000360535 FBXO4Q9UKT5 387 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 PCOLCE2Q9UKZ9 415 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 F5H5P2 479 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 EIF1AYO14602 144 aaKnown RBP11□□□□□ -0.65
CLIP3-201ENST00000360535 CCSO14618 274 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 GIPP09681 153 aaPredicted RBP11□□□□□ -0.65
CLIP3-201ENST00000360535 SDHAP31040 664 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 EGR4Q05215 589 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 SMAD2Q15796 467 aaKnown RBP11□□□□□ -0.65
CLIP3-201ENST00000360535 WDR38Q5JTN6 314 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 WBP2NLQ6ICG8 309 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 CHRDL2Q6WN34 429 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 PRSS42Q7Z5A4 293 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 LRRTM1Q86UE6 522 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 PRSS35Q8N3Z0 413 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 C19orf47Q8N9M1 422 aaKnown RBP11□□□□□ -0.65
CLIP3-201ENST00000360535 OR6M1Q8NGM8 313 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 ZDHHC19Q8WVZ1 309 aaPredicted RBP11□□□□□ -0.65
CLIP3-201ENST00000360535 METTL21AQ8WXB1 218 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 TGM7Q96PF1 710 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 RTN4RQ9BZR6 473 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 B3GNT4Q9C0J1 378 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 PFDN2Q9UHV9 154 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 SESN1Q9Y6P5 492 aa11□□□□□ -0.65
CLIP3-201ENST00000360535 C2orf72A6NCS6 295 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 OR4C45A6NMZ5 311 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 CDC40O60508 579 aaKnown RBP eCLIP10.99□□□□□ -0.65
CLIP3-201ENST00000360535 SLC16A7O60669 478 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 APOC3P02656 99 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 EN2P19622 333 aaPredicted RBP10.99□□□□□ -0.65
CLIP3-201ENST00000360535 M6PRP20645 277 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 CXCR1P25024 350 aa10.99□□□□□ -0.65
CLIP3-201ENST00000360535 PRSS3P35030 304 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms