RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 A0A1W2PRQ8 180 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 MAGEA13PA6NCF6 341 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 OVOL3O00110 214 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 CDC42EP2O14613 210 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 ACOT8O14734 319 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 IGKV3-15P01624 115 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 IGLV1-44P01699 117 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 CD8AP01732 235 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 H1F0P07305 194 aaKnown RBP13.78□□□□□ -0.2
CLN3-201ENST00000333496 MS4A2Q01362 244 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 CCNIQ14094 377 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 DGCR6Q14129 220 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 FLOT2Q14254 428 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 TRIM25Q14258 630 aaKnown RBP13.78□□□□□ -0.2
CLN3-201ENST00000333496 HIST3H3Q16695 136 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 ARMC4Q5T2S8 1044 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 PODNL1Q6PEZ8 512 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 LRRC75AQ8NAA5 344 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 PERPQ96FX8 193 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 DHRS1Q96LJ7 313 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 SLC38A2Q96QD8 506 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 ZNF347Q96SE7 839 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 SEPHS2Q99611 448 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 FOXB1Q99853 325 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 B3GNT2Q9NY97 397 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 ZNF224Q9NZL3 707 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 MOKQ9UQ07 419 aa13.78□□□□□ -0.2
CLN3-201ENST00000333496 FAM32AQ9Y421 112 aaKnown RBP13.78□□□□□ -0.2
CLN3-201ENST00000333496 TRMUO75648 421 aaKnown RBP13.77□□□□□ -0.21
CLN3-201ENST00000333496 CELA3BP08861 270 aa13.77□□□□□ -0.21
CLN3-201ENST00000333496 SAGP10523 405 aaPredicted RBP13.77□□□□□ -0.21
CLN3-201ENST00000333496 B4GALT1P15291 398 aa13.77□□□□□ -0.21
CLN3-201ENST00000333496 PAX1P15863 534 aa13.77□□□□□ -0.21
CLN3-201ENST00000333496 GPR4P46093 362 aa13.77□□□□□ -0.21
CLN3-201ENST00000333496 PTH2RP49190 550 aa13.77□□□□□ -0.21
CLN3-201ENST00000333496 SEC23BQ15437 767 aa13.77□□□□□ -0.21
CLN3-201ENST00000333496 C3orf36Q3SXR2 165 aa13.77□□□□□ -0.21
CLN3-201ENST00000333496 ALG10Q5BKT4 473 aa13.77□□□□□ -0.21
CLN3-201ENST00000333496 IZUMO2Q6UXV1 221 aa13.77□□□□□ -0.21
CLN3-201ENST00000333496 ZNF813Q6ZN06 617 aa13.77□□□□□ -0.21
CLN3-201ENST00000333496 TMPRSS11FQ6ZWK6 438 aa13.77□□□□□ -0.21
CLN3-201ENST00000333496 FAM169BQ8N8A8 192 aa13.77□□□□□ -0.21
CLN3-201ENST00000333496 OR51A7Q8NH64 312 aa13.77□□□□□ -0.21
CLN3-201ENST00000333496 TNFRSF13CQ96RJ3 184 aa13.77□□□□□ -0.21
CLN3-201ENST00000333496 FUZQ9BT04 418 aa13.77□□□□□ -0.21
CLN3-201ENST00000333496 TMUB1Q9BVT8 246 aa13.77□□□□□ -0.21
CLN3-201ENST00000333496 GSX2Q9BZM3 304 aa13.77□□□□□ -0.21
CLN3-201ENST00000333496 ZNF701Q9NV72 531 aaPredicted RBP13.77□□□□□ -0.21
CLN3-201ENST00000333496 POFUT2Q9Y2G5 429 aa13.77□□□□□ -0.21
CLN3-201ENST00000333496 TRBV4-1A0A0J9YWV2 114 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 NPIPB13A6NJU9 1138 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 EFCAB9A8MZ26 197 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 NPIPB4C9JG80 1138 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 ATP6V1G2-DDX39BF2Z307 99 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 IGHG1P01857 330 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 QDPRP09417 244 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 CECR9P0C854 216 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 CBR1P16152 277 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 ZNF26P17031 533 aaPredicted RBP13.76□□□□□ -0.21
CLN3-201ENST00000333496 ATP6V1B2P21281 511 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 PAX7P23759 505 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 ERFP50548 548 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 TRAP1Q12931 704 aaKnown RBP13.76□□□□□ -0.21
CLN3-201ENST00000333496 CYP2R1Q6VVX0 501 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 OAFQ86UD1 273 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 DTX2Q86UW9 622 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 IGFN1Q86VF2 1251 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 SYT14Q8NB59 555 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 NOXO1Q8NFA2 376 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 OR13C2Q8NGS9 318 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 HDAC2Q92769 488 aaKnown RBP13.76□□□□□ -0.21
CLN3-201ENST00000333496 MCHR2Q969V1 340 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 ZNF75AQ96N20 296 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 TRAF4Q9BUZ4 470 aaPredicted RBP13.76□□□□□ -0.21
CLN3-201ENST00000333496 TXNIPQ9H3M7 391 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 NOX3Q9HBY0 568 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 ACTR3BQ9P1U1 418 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 POU2F3Q9UKI9 436 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 RTTNQ86VV8 2226 aa13.76□□□□□ -0.21
CLN3-201ENST00000333496 MCIDASD6RGH6 385 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 DHHO43323 396 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 TMCC2O75069 709 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 BAG2O95816 211 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 IGHMP01871 453 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 HLA-HP01893 362 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 CALCRP30988 508 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 OMPP47874 163 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 SLC9A3P48764 834 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 DAP3P51398 398 aaKnown RBP13.75□□□□□ -0.21
CLN3-201ENST00000333496 ZNF133P52736 654 aaPredicted RBP13.75□□□□□ -0.21
CLN3-201ENST00000333496 CTXN1P60606 82 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 MYBPC1Q00872 1141 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 NAAAQ02083 359 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 FGD3Q5JSP0 725 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 Q5PR19 223 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 SHEQ5VZ18 495 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 TMEM154Q6P9G4 183 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 RRM2BQ7LG56 351 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 MDP1Q86V88 176 aa13.75□□□□□ -0.21
CLN3-201ENST00000333496 CCDC36Q8IYA8 594 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms