RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 APIPQ96GX9 242 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 COCHO43405 550 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 SECTM1Q8WVN6 248 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 ACTR3CQ9C0K3 210 aaPredicted RBP13.24□□□□□ -0.29
COL7A1-201ENST00000328333 TMEM184BQ9Y519 407 aaPredicted RBP13.24□□□□□ -0.29
COL7A1-201ENST00000328333 ICAM2P13598 275 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 OR2T2Q6IF00 324 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 OR4F5Q8NH21 305 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 TVP23CQ96ET8 276 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 OR4F4Q96R69 305 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 PCYT2Q99447 389 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 MARCH4Q9P2E8 410 aaPredicted RBP13.23□□□□□ -0.29
COL7A1-201ENST00000328333 ZNF90Q03938 601 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 GUK1Q16774 197 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 CISD2Q8N5K1 135 aaKnown RBP13.23□□□□□ -0.29
COL7A1-201ENST00000328333 DEFB118Q96PH6 123 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 PKD1L3Q7Z443 1732 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 DDNO94850 711 aaPredicted RBP13.23□□□□□ -0.29
COL7A1-201ENST00000328333 SLC35D2Q76EJ3 337 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 ZNF595Q8IYB9 648 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 ACOT4Q8N9L9 421 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 OR13C9Q8NGT0 318 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 OR11L1Q8NGX0 322 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 A0A0A6YYJ9 748 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 A0A0J9YY10 115 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 ABHD16AO95870 558 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 ZNF140P52738 457 aaPredicted RBP13.23□□□□□ -0.29
COL7A1-201ENST00000328333 IL20RBQ6UXL0 311 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 RABEPKQ7Z6M1 372 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 CPEB1Q9BZB8 566 aaKnown RBP13.23□□□□□ -0.29
COL7A1-201ENST00000328333 SSUH2Q9Y2M2 353 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 ZNF888P0CJ79 500 aaPredicted RBP13.23□□□□□ -0.29
COL7A1-201ENST00000328333 IDUAP35475 653 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 MPPED2Q15777 294 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 PSAPL1Q6NUJ1 521 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 CLEC9AQ6UXN8 241 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 ZNF596Q8TC21 504 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 ADIPOR1Q96A54 375 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 SMIM7Q9BQ49 75 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 MYEF2Q9P2K5 600 aaKnown RBP13.23□□□□□ -0.29
COL7A1-201ENST00000328333 CSAG2Q9Y5P2 127 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 ZNF724A8MTY0 619 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 FAM155AB1AL88 458 aaPredicted RBP13.23□□□□□ -0.29
COL7A1-201ENST00000328333 C17orf105B2RV13 164 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 ELAVL4P26378 380 aaKnown RBP13.23□□□□□ -0.29
COL7A1-201ENST00000328333 RAB13P51153 203 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 WDR73Q6P4I2 378 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 ZDHHC11Q9H8X9 412 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 KIR2DS5A0A0G2JLQ3 304 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 A0A0G2JNG1 304 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 TEX50A0A1B0GTY4 177 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 FAM183AA6NL82 134 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 KIR2DS3K7RE56 304 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 CST2P09228 141 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 ENPP1P22413 925 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 KIR2DS5Q14953 304 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 TFAP2EQ6VUC0 442 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 MMP21Q8N119 569 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 CELF2-AS1Q8N7Q2 184 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 SLC35B4Q969S0 331 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 ASH2LQ9UBL3 628 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 B3GALT5Q9Y2C3 310 aa13.23□□□□□ -0.29
COL7A1-201ENST00000328333 TRBV4-1A0A0J9YWV2 114 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 CSO75390 466 aaKnown RBP13.22□□□□□ -0.29
COL7A1-201ENST00000328333 IGHEP01854 428 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 VIPR2P41587 438 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 CLDN20P56880 219 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 DOC2BQ14184 412 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 RELTQ969Z4 430 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 ARHGDIGQ99819 225 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 GPR55Q9Y2T6 319 aaPredicted RBP13.22□□□□□ -0.29
COL7A1-201ENST00000328333 ZNF264O43296 627 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 OR10J4P0C629 311 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 CDC20BQ86Y33 519 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 FIBINQ8TAL6 211 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 ARNT2Q9HBZ2 717 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 DLEC1Q9Y238 1755 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 H0YIV9 168 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 OR7C1O76099 320 aaPredicted RBP13.22□□□□□ -0.29
COL7A1-201ENST00000328333 ZNF26P17031 533 aaPredicted RBP13.22□□□□□ -0.29
COL7A1-201ENST00000328333 HOXC13P31276 330 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 PM20D1Q6GTS8 502 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 PINX1Q96BK5 328 aaKnown RBP13.22□□□□□ -0.29
COL7A1-201ENST00000328333 GABRR3A8MPY1 467 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 EIF1BO60739 113 aaKnown RBP13.22□□□□□ -0.29
COL7A1-201ENST00000328333 CBR1P16152 277 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 SLC5A12Q1EHB4 618 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 LY6G5CQ5SRR4 150 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 SDR9C7Q8NEX9 313 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 SELENOIQ9C0D9 397 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 BET1O15155 118 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 HMGN2P05204 90 aaKnown RBP13.22□□□□□ -0.29
COL7A1-201ENST00000328333 GM2AP17900 193 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 GCSHP23434 173 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 PTTG1IPP53801 180 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 NNATQ16517 81 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 TMEM97Q5BJF2 176 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 GPX8Q8TED1 209 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 MMP26Q9NRE1 261 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 ZNF727A8MUV8 499 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms