RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 RNF165Q6ZSG1 346 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 BIVMQ86UB2 503 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 DCAF4L2Q8NA75 395 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 C20orf203Q8NBC4 194 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 SPATA4Q8NEY3 305 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 KCNG3Q8TAE7 436 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 RNF138Q8WVD3 245 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 STARD8Q92502 1023 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 C10orf35Q96D05 121 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 PAGE5Q96GU1 130 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 SLC38A2Q96QD8 506 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 COPS8Q99627 209 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 BCL7BQ9BQE9 202 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 REEP4Q9H6H4 257 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 SUDS3Q9H7L9 328 aaPredicted RBP2.25□□□□□ -2.05
HMGB1-201ENST00000326004 NEK6Q9HC98 313 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 RPRD1BQ9NQG5 326 aaKnown RBP2.25□□□□□ -2.05
HMGB1-201ENST00000326004 MMP26Q9NRE1 261 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 RPL36Q9Y3U8 105 aaKnown RBP2.25□□□□□ -2.05
HMGB1-201ENST00000326004 NEUROG3Q9Y4Z2 214 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 NPTNQ9Y639 398 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 SCN4AP35499 1836 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 SCN11AQ9UI33 1791 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 CEP290O15078 2479 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 USP54Q70EL1 1684 aa2.25□□□□□ -2.05
HMGB1-201ENST00000326004 PIKFYVEQ9Y2I7 2098 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 TET2Q6N021 2002 aaPredicted RBP2.24□□□□□ -2.05
HMGB1-201ENST00000326004 RBBP6Q7Z6E9 1792 aaKnown RBP2.24□□□□□ -2.05
HMGB1-201ENST00000326004 ABCC6O95255 1503 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 PPIAL4EA0A075B759 164 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 ERICH4A6NGS2 130 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 TCP11X1B4DZS4 312 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 PANO1I0J062 215 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 GFYI3L273 518 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 WRBO00258 174 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 POLR2DO15514 142 aaKnown RBP2.24□□□□□ -2.05
HMGB1-201ENST00000326004 DFNA5O60443 496 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 NPIPB7O75200 414 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 CDH16O75309 829 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 CST1P01037 141 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 CRYGBP07316 175 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 PPIAL4FP0DN26 164 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 MDKP21741 143 aaPredicted RBP2.24□□□□□ -2.05
HMGB1-201ENST00000326004 CCNE1P24864 410 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 KRTAP5-9P26371 169 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 EPS15P42566 896 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 OR1G1P47890 313 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 KLK7P49862 253 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 CRYBB1P53674 252 aaPredicted RBP2.24□□□□□ -2.05
HMGB1-201ENST00000326004 PKNOX1P55347 436 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 SH3BGRP55822 239 aaPredicted RBP2.24□□□□□ -2.05
HMGB1-201ENST00000326004 KRTAP12-2P59991 146 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 DAZ2Q13117 558 aaKnown RBP2.24□□□□□ -2.05
HMGB1-201ENST00000326004 TMED1Q13445 227 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 CAPRIN1Q14444 709 aaKnown RBP2.24□□□□□ -2.05
HMGB1-201ENST00000326004 GRB7Q14451 532 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 HADHQ16836 314 aaKnown RBP2.24□□□□□ -2.05
HMGB1-201ENST00000326004 PARP15Q460N3 678 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 SPANXN2Q5MJ10 180 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 C1orf100Q5SVJ3 147 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 RNASEKQ6P5S7 137 aaKnown RBP2.24□□□□□ -2.05
HMGB1-201ENST00000326004 ZNF530Q6P9A1 599 aaPredicted RBP2.24□□□□□ -2.05
HMGB1-201ENST00000326004 TMCO2Q7Z6W1 182 aaPredicted RBP2.24□□□□□ -2.05
HMGB1-201ENST00000326004 TRIM69Q86WT6 500 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 TGIF2LXQ8IUE1 241 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 CCDC65Q8IXS2 484 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 OFCC1Q8IZS5 231 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 RDH10Q8IZV5 341 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 SLC34A3Q8N130 599 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 OTUD6BQ8N6M0 293 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 SUMF2Q8NBJ7 301 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 TRPV1Q8NER1 839 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 OR10G3Q8NGC4 313 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 SLC22A8Q8TCC7 542 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 ZNF799Q96GE5 643 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 ZNF414Q96IQ9 312 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 PANX1Q96RD7 426 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 CHP1Q99653 195 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 NRTNQ99748 197 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 NRIP2Q9BQI9 281 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 C11orf70Q9BRQ4 267 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 TRIM62Q9BVG3 475 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 HES7Q9BYE0 225 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 VCPKMTQ9H867 229 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 NHEJ1Q9H9Q4 299 aaPredicted RBP2.24□□□□□ -2.05
HMGB1-201ENST00000326004 DAZ3Q9NR90 486 aaKnown RBP2.24□□□□□ -2.05
HMGB1-201ENST00000326004 KLHL28Q9NXS3 571 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 SLC2A8Q9NY64 477 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 SLC7A8Q9UHI5 535 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 CHTOPQ9Y3Y2 248 aaKnown RBP2.24□□□□□ -2.05
HMGB1-201ENST00000326004 AKAP11Q9UKA4 1901 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 ALS2Q96Q42 1657 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 BRCA1P38398 1863 aaKnown RBP2.24□□□□□ -2.05
HMGB1-201ENST00000326004 PPIP5K1Q6PFW1 1433 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 KIF13BQ9NQT8 1826 aa2.24□□□□□ -2.05
HMGB1-201ENST00000326004 CPDO75976 1380 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 RPAP1Q9BWH6 1393 aaPredicted RBP2.23□□□□□ -2.05
HMGB1-201ENST00000326004 SLIT3O75094 1523 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 TRPM3Q9HCF6 1732 aaPredicted RBP2.23□□□□□ -2.05
HMGB1-201ENST00000326004 CRYBG1Q9Y4K1 1723 aa2.23□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms