RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 NAP1L6A6NFF2 107 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 TGFBR3LH3BV60 316 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 M0QYG6 137 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 IFNGR1P15260 489 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 CXCR1P25024 350 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 TACR3P29371 465 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 POU3F4P49335 361 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 OR7E24Q6IFN5 339 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 ZNF600Q6ZNG1 722 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 SLC22A8Q8TCC7 542 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 METTL21AQ8WXB1 218 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 KTI12Q96EK9 354 aaPredicted RBP11.5□□□□□ -0.57
LIG1-201ENST00000263274 ELOVL3Q9HB03 270 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 REV3LO60673 3130 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 A0A1B0GUH1 482 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 A0A1W2PQF6 199 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 RPS10-NUDT3A0A1W2PQS6 291 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 C17orf105B2RV13 164 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 EIF1AYO14602 144 aaKnown RBP11.5□□□□□ -0.57
LIG1-201ENST00000263274 BET1O15155 118 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 CTNSO60931 367 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 AKR7A3O95154 331 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 APOC3P02656 99 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 RAB40ALP0C0E4 278 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 MAPK3P27361 379 aaPredicted RBP11.5□□□□□ -0.57
LIG1-201ENST00000263274 RPL18Q07020 188 aaKnown RBP11.5□□□□□ -0.57
LIG1-201ENST00000263274 FHL1Q13642 323 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 CHRDL2Q6WN34 429 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 SP7Q8TDD2 431 aaPredicted RBP11.5□□□□□ -0.57
LIG1-201ENST00000263274 GPR148Q8TDV2 347 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 RAB40AQ8WXH6 277 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 HAVCR1Q96D42 359 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 CMKLR1Q99788 373 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 USB1Q9BQ65 265 aaKnown RBP11.5□□□□□ -0.57
LIG1-201ENST00000263274 CHST6Q9GZX3 395 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 GMEB2Q9UKD1 530 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 ATXN7L1Q9ULK2 861 aaPredicted RBP11.5□□□□□ -0.57
LIG1-201ENST00000263274 UNC13CQ8NB66 2214 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 ASXL3Q9C0F0 2248 aa11.5□□□□□ -0.57
LIG1-201ENST00000263274 GSTZ1O43708 216 aaPredicted RBP11.49□□□□□ -0.57
LIG1-201ENST00000263274 CD3DP04234 171 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 CT45A8P0DMV1 189 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 CT45A9P0DMV2 189 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 APEHP13798 732 aaKnown RBP11.49□□□□□ -0.57
LIG1-201ENST00000263274 OR1D4P47884 311 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 GMFBP60983 142 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 RAP2BP61225 183 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 MEP1BQ16820 701 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 C2orf68Q2NKX9 166 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 CT45A2Q5DJT8 189 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 C17orf107Q6ZR85 190 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 KRT77Q7Z794 578 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 ZNF321PQ8N8H1 164 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 RLN3Q8WXF3 142 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 MARVELD3Q96A59 401 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 VSTM2LQ96N03 204 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 LPAR4Q99677 370 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 PBX4Q9BYU1 374 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 MED11Q9P086 117 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 FBXL3Q9UKT7 428 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 CYP8B1Q9UNU6 501 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 MED12Q93074 2177 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 SPTBN5Q9NRC6 3674 aaKnown RBP11.49□□□□□ -0.57
LIG1-201ENST00000263274 TNRC18O15417 2968 aaPredicted RBP11.49□□□□□ -0.57
LIG1-201ENST00000263274 ANKRD20A5PA0PJZ0 165 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 TGM6O95932 706 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 RRASP10301 218 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 EIF1AXP47813 144 aaKnown RBP11.49□□□□□ -0.57
LIG1-201ENST00000263274 SHHQ15465 462 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 LIN54Q6MZP7 749 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 LRFN4Q6PJG9 635 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 CHST4Q8NCG5 386 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 OR6M1Q8NGM8 313 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 OR2G2Q8NGZ5 317 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 MIB2Q96AX9 1013 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 CTHRC1Q96CG8 243 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 SEC22AQ96IW7 307 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 KLHDC3Q9BQ90 382 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 PCDHB16Q9NRJ7 776 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 ANKRD10Q9NXR5 420 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 TAS2R5Q9NYW4 299 aa11.49□□□□□ -0.57
LIG1-201ENST00000263274 CGGBP1Q9UFW8 167 aaPredicted RBP11.49□□□□□ -0.57
LIG1-201ENST00000263274 TNFSF14O43557 240 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 S100A11P31949 105 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 PRSS3P35030 304 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 PSMD4P55036 377 aaKnown RBP11.48□□□□□ -0.57
LIG1-201ENST00000263274 RAG2P55895 527 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 DLX5P56178 289 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 GPR85P60893 370 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 SMAD2Q15796 467 aaKnown RBP11.48□□□□□ -0.57
LIG1-201ENST00000263274 TUSC1Q2TAM9 212 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 SLC16A9Q7RTY1 509 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 HDDC2Q7Z4H3 204 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 TGM7Q96PF1 710 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 AMELYQ99218 206 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 CENPMQ9NSP4 180 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 hCG_1807616A0A1W2PRN6 198 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 EFCAB7A8K855 629 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 F5H5P2 479 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 CDC40O60508 579 aaKnown RBP eCLIP11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms