RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 KCNJ16Q9NPI9 418 aa13.4□□□□□ -0.26
PTPRA-201ENST00000216877 NCDNQ9UBB6 729 aa13.4□□□□□ -0.26
PTPRA-201ENST00000216877 SMCO3A2RU48 225 aa13.4□□□□□ -0.26
PTPRA-201ENST00000216877 H7C417 338 aa13.4□□□□□ -0.26
PTPRA-201ENST00000216877 PAPLNO95428 1278 aa13.4□□□□□ -0.26
PTPRA-201ENST00000216877 XKR4Q5GH76 650 aa13.4□□□□□ -0.26
PTPRA-201ENST00000216877 IL34Q6ZMJ4 242 aa13.4□□□□□ -0.26
PTPRA-201ENST00000216877 TIPARPQ7Z3E1 657 aaKnown RBP13.4□□□□□ -0.26
PTPRA-201ENST00000216877 FAM129CQ86XR2 697 aa13.4□□□□□ -0.26
PTPRA-201ENST00000216877 OR56B1Q8NGI3 324 aa13.4□□□□□ -0.26
PTPRA-201ENST00000216877 FGF11Q92914 225 aa13.4□□□□□ -0.26
PTPRA-201ENST00000216877 BSCL2Q96G97 398 aaPredicted RBP13.4□□□□□ -0.26
PTPRA-201ENST00000216877 CMTM3Q96MX0 182 aa13.4□□□□□ -0.26
PTPRA-201ENST00000216877 MTFP1Q9UDX5 166 aa13.4□□□□□ -0.26
PTPRA-201ENST00000216877 WDR45Q9Y484 360 aa13.4□□□□□ -0.26
PTPRA-201ENST00000216877 TBC1D3DA0A087WVF3 549 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 TBC1D3IA0A087WXS9 549 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 TBC1D3EA0A087X179 549 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 TBC1D3KA0A087X1G2 549 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 FEZF1A0PJY2 475 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 TBC1D3BA6NDS4 549 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 TBC1D3FA6NER0 549 aaPredicted RBP13.39□□□□□ -0.27
PTPRA-201ENST00000216877 TBC1D3LB9A6J9 549 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 UGDHO60701 494 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 TBC1D3HP0C7X1 549 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 CD53P19397 219 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 DPP4P27487 766 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 CDX1P47902 265 aaPredicted RBP13.39□□□□□ -0.27
PTPRA-201ENST00000216877 TBC1D3GQ6DHY5 549 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 TBC1D3CQ6IPX1 549 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 GDF7Q7Z4P5 450 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 TBC1D3Q8IZP1 549 aaPredicted RBP13.39□□□□□ -0.27
PTPRA-201ENST00000216877 EID2Q8N6I1 236 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 ZNF676Q8N7Q3 588 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 OR4S1Q8NGB4 309 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 NUDCD2Q8WVJ2 157 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 OR2M4Q96R27 311 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 MACROD1Q9BQ69 325 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 C1QTNF2Q9BXJ5 285 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 ULBP3Q9BZM4 244 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 PLEKHA1Q9HB21 404 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 PARPBPQ9NWS1 579 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 LPAR3Q9UBY5 353 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 MRPS33Q9Y291 106 aaKnown RBP13.39□□□□□ -0.27
PTPRA-201ENST00000216877 ADAM18Q9Y3Q7 739 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 KPTNQ9Y664 436 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 IGHV2-5P01817 119 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 GAAP10253 952 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 TYRP1P17643 537 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 LPAR6P43657 344 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 MECP2P51608 486 aaKnown RBP13.39□□□□□ -0.27
PTPRA-201ENST00000216877 RAP1AP62834 184 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 THSD4Q6ZMP0 1018 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 GABRG1Q8N1C3 465 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 JAGN1Q8N5M9 183 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 LGR4Q9BXB1 951 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 LANCL2Q9NS86 450 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 SIDT1Q9NXL6 827 aaKnown RBP13.39□□□□□ -0.27
PTPRA-201ENST00000216877 PRR13Q9NZ81 148 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 ACAD8Q9UKU7 415 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 FITM1A5D6W6 292 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 ZNF727A8MUV8 499 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 FOLR2P14207 255 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 LAG3P18627 525 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 SERPINA4P29622 427 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 RGS19P49795 217 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 KHKP50053 298 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 EFNB2P52799 333 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 ARHGAP11AQ6P4F7 1023 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 ZNF227Q86WZ6 799 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 KDM8Q8N371 416 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 OR4K14Q8NGD5 310 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 SUN3Q8TAQ9 357 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 MITD1Q8WV92 249 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 ROBO4Q8WZ75 1007 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 PHB2Q99623 299 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 PRDM13Q9H4Q3 707 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 METTL8Q9H825 291 aaKnown RBP13.39□□□□□ -0.27
PTPRA-201ENST00000216877 SFXN1Q9H9B4 322 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 STEAP1Q9UHE8 339 aa13.39□□□□□ -0.27
PTPRA-201ENST00000216877 KIAA0355O15063 1070 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 ALOX12BO75342 701 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 GLSO94925 669 aaPredicted RBP13.38□□□□□ -0.27
PTPRA-201ENST00000216877 PCCBP05166 539 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 OR8U9P0C7N5 309 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 AK4P27144 223 aaPredicted RBP13.38□□□□□ -0.27
PTPRA-201ENST00000216877 PSMB6P28072 239 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 SERPINF1P36955 418 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 SSR2P43308 183 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 OR8U1Q8NH10 309 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 ZNF480Q8WV37 535 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 OPN3Q9H1Y3 402 aaPredicted RBP13.38□□□□□ -0.27
PTPRA-201ENST00000216877 MED17Q9NVC6 651 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 A0A1B0GTH9 108 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 ZNF736B4DX44 427 aaPredicted RBP13.38□□□□□ -0.27
PTPRA-201ENST00000216877 PIN1P1O15428 100 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 FCMRO60667 390 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 SFTPBP07988 381 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 PPP2CBP62714 309 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 PPP2CAP67775 309 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms