RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 SMIM7Q9BQ49 75 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 NUDT9Q9BW91 350 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 CHST6Q9GZX3 395 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 ARV1Q9H2C2 271 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 TUBA4BQ9H853 241 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 Q9Y3F1 56 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 MMP24Q9Y5R2 645 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 FTCDNL1E5RQL4 147 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 TBX19O60806 448 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 PQBP1O60828 265 aaKnown RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 CSTAP01040 98 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 APEHP13798 732 aaKnown RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 GJA5P36382 358 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 HMGA2P52926 109 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 DGCR2P98153 550 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 EGR3Q06889 387 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF124Q15973 351 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 TUSC1Q2TAM9 212 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 OR52W1Q6IF63 320 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 CLECL1Q8IZS7 167 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 OR4K13Q8NH42 304 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 ANKRD9Q96BM1 317 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 RASD2Q96D21 266 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 SIDT1Q9NXL6 827 aaKnown RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 GPR55Q9Y2T6 319 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 PTGDR2Q9Y5Y4 395 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 HMX2A2RU54 273 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 TRDCB7Z8K6 153 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF207O43670 478 aaKnown RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 SCO1O75880 301 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 CBR1P16152 277 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF25P17030 456 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 PPP1CBP62140 327 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 IRF3Q14653 427 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 ELOBQ15370 118 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 TREML2Q5T2D2 321 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 MMP21Q8N119 569 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF439Q8NDP4 499 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 FGGYQ96C11 551 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 ASB16Q96NS5 453 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 OR10A5Q9H207 317 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 TRBV4-1A0A0J9YWV2 114 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF724A8MTY0 619 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 ERVH48-1M5A8F1 160 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 SUSD5O60279 629 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 CNMDO75829 334 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 RAC2P15153 192 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 BLKP51451 505 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF154Q13106 437 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 ALKBH1Q13686 389 aaKnown RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 SLC5A12Q1EHB4 618 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 SDR9C7Q8NEX9 313 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 BORCS8Q96FH0 119 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 CMC2Q9NRP2 79 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 LRIT1Q9P2V4 623 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 EDDM13A0A1B0GTR0 161 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 M0R082 166 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 FZD9O00144 591 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 APBA3O96018 575 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 FPR2P25090 351 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 GDF5P43026 501 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 SLC8B1Q6J4K2 584 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 C12orf54Q6X4T0 127 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 SLC35G3Q8N808 338 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 OR51A4Q8NGJ6 313 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 OR51S1Q8NGJ8 323 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 OR52I2Q8NH67 350 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 KCNJ15Q99712 375 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 C1orf198Q9H425 327 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 RIMS4Q9H426 269 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-220ENST00000641603 ACER3Q9NUN7 267 aa4.32□□□□□ -1.72
SCN1A-220ENST00000641603 RGPD1P0DJD0 1748 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 A0A1B0GVT2 93 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 A8MXK9 166 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 EIF1BO60739 113 aaKnown RBP4.31□□□□□ -1.72
SCN1A-220ENST00000641603 RNGTTO60942 597 aaKnown RBP4.31□□□□□ -1.72
SCN1A-220ENST00000641603 TACR1P25103 407 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 GRPRP30550 384 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 BSGP35613 385 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 EIF1P41567 113 aaKnown RBP4.31□□□□□ -1.72
SCN1A-220ENST00000641603 NRLP54845 237 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 WNT7BP56706 349 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 BAXQ07812 192 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 CEBPEQ15744 281 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 KIAA0895LQ68EN5 471 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 OR4C11Q6IEV9 310 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 PRR27Q6MZM9 219 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 TMEM88Q6PEY1 159 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 SLC16A13Q7RTY0 426 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 LINC00116Q8NCU8 138 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 OR2G3Q8NGZ4 309 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 SERINC2Q96SA4 455 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 HCAR1Q9BXC0 346 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF552Q9H707 407 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-220ENST00000641603 MTFP1Q9UDX5 166 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 RNF24Q9Y225 148 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 KIF13AQ9H1H9 1805 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 CCDC187A0A096LP49 1063 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 C2orf78A6NCI8 922 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 PLRG1O43660 514 aaKnown RBP4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms