RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 NPY4RP50391 375 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 HBG1P69891 147 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 HBG2P69892 147 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 KIAA0141Q14154 515 aaPredicted RBP2.59□□□□□ -2
SCN1A-219ENST00000641575 CNIH2Q6PI25 160 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 TMEM220Q6QAJ8 160 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 TMUB2Q71RG4 321 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 ZBTB44Q8NCP5 570 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 OR1S1Q8NH92 325 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 GALMQ96C23 342 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 RPUSD4Q96CM3 377 aaKnown RBP2.59□□□□□ -2
SCN1A-219ENST00000641575 PGAM5Q96HS1 289 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 MRPL13Q9BYD1 178 aaKnown RBP2.59□□□□□ -2
SCN1A-219ENST00000641575 OR2J1Q9GZK6 312 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 S1PR5Q9H228 398 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 LOC102723971A0A1B0GUV8 181 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 PRAMEF11O60813 436 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 SCRG1O75711 98 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 ZNF17P17021 662 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 DTYMKP23919 212 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 ELAVL4P26378 380 aaKnown RBP2.59□□□□□ -2
SCN1A-219ENST00000641575 CD81P60033 236 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 PRAMEF9Q5VWM5 478 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 LEMD1Q68G75 181 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 DHRS11Q6UWP2 260 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 ENDOVQ8N8Q3 282 aaKnown RBP2.59□□□□□ -2
SCN1A-219ENST00000641575 DYNC2LI1Q8TCX1 351 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 XAGE5Q8WWM1 108 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 IMP4Q96G21 291 aaKnown RBP2.59□□□□□ -2
SCN1A-219ENST00000641575 BOCQ9BWV1 1114 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 PADI3Q9ULW8 664 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 SNX10Q9Y5X0 201 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 ATAD5Q96QE3 1844 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 PIK3C2BO00750 1634 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 TRAV17A0A0B4J275 112 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 RNF222A6NCQ9 220 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 METTL15A6NJ78 407 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 GRXCR1A8MXD5 290 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 APOC4-APOC2K7ER74 178 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 SCAMP2O15127 329 aaKnown RBP2.59□□□□□ -2
SCN1A-219ENST00000641575 TCAPO15273 167 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 SLC16A6O15403 523 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 PRKYO43930 277 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 UPK1BO75841 260 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 RBBP9O75884 186 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 VNN1O95497 513 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 KLF8O95600 359 aaPredicted RBP2.59□□□□□ -2
SCN1A-219ENST00000641575 TIMP1P01033 207 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 APOC2P02655 101 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 ESR1P03372 595 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 C1GALT1C1LP0DN25 315 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 HIST1H1BP16401 226 aaKnown RBP2.59□□□□□ -2
SCN1A-219ENST00000641575 MC5RP33032 325 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 OPRM1P35372 400 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 PTH2RP49190 550 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 OR2B8PP59922 312 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 ARHGAP1Q07960 439 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 ABHD17CQ6PCB6 329 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 UBE2DNLQ8IWF7 75 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 ACOT4Q8N9L9 421 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 HSH2DQ96JZ2 352 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 TMEM56Q96MV1 263 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 SLC6A18Q96N87 628 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 TSSK3Q96PN8 268 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 C16orf70Q9BSU1 422 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 OR10A5Q9H207 317 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 OR10A2Q9H208 303 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 P2RY12Q9H244 342 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 LIN28AQ9H9Z2 209 aaKnown RBP2.59□□□□□ -2
SCN1A-219ENST00000641575 CRLF2Q9HC73 371 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 GKN1Q9NS71 199 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 IFNL4K9M1U5 179 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 EMP2P54851 167 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 TPPP2P59282 170 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 LCN6P62502 163 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 NRG1Q02297 640 aaPredicted RBP2.59□□□□□ -2
SCN1A-219ENST00000641575 PLCXD2Q0VAA5 305 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 PDZD11Q5EBL8 140 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 OR2T5Q6IEZ7 315 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 PAQR6Q6TCH4 344 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 TRABD2AQ86V40 505 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 CLDN22Q8N7P3 220 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 OR2T29Q8NH02 315 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 PACRGQ96M98 296 aaPredicted RBP2.59□□□□□ -2
SCN1A-219ENST00000641575 OR51I2Q9H344 312 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 DPEP3Q9H4B8 488 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 V9GYS6 101 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 ZNF609O15014 1411 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 ATRNO75882 1429 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 OBSL1O75147 1896 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 UNC119BA6NIH7 251 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 LRRC10BA6NIK2 292 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 CD8B2A6NJW9 211 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 OR6C76A6NM76 312 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 A8MUA0 341 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 SCAMP3O14828 347 aaKnown RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 SLC22A5O76082 557 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 AIFM1O95831 613 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 CSTAP01040 98 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 MT-ND4LP03901 98 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms