RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 ZNF701Q9NV72 531 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-216ENST00000637968 IL20RAQ9UHF4 553 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 TNFSF18Q9UNG2 199 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 PPIL1Q9Y3C6 166 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 XKRY2A2RUG3 117 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 DHRS7CA6NNS2 312 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 XKRYO14609 159 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 BCAT2O15382 392 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-216ENST00000637968 ERAL1O75616 437 aaKnown RBP5.29□□□□□ -1.56
SCN1A-216ENST00000637968 SOD2P04179 222 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 TK1P04183 234 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 RAB40ALP0C0E4 278 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 OR5G3P0C626 314 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 ATXN8OSP0DMR3 200 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 PGAM2P15259 253 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 TNFRSF1BP20333 461 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF10P21506 573 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-216ENST00000637968 BMP5P22003 454 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 CEACAM8P31997 349 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-216ENST00000637968 GABRA2P47869 451 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 TNFSF10P50591 281 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 ARF6P62330 175 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 SHC2P98077 582 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 ACSM2AQ08AH3 577 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 OR4D1Q15615 310 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 VWA2Q5GFL6 755 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 C10orf91Q5T1B1 145 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 CPTPQ5TA50 214 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 ACSM2BQ68CK6 577 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 DRAM2Q6UX65 266 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 GTF2H5Q6ZYL4 71 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 NUFIP2Q7Z417 695 aaKnown RBP5.29□□□□□ -1.56
SCN1A-216ENST00000637968 LRP10Q7Z4F1 713 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 NRSN1Q8IZ57 195 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 MUC20Q8N307 709 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-216ENST00000637968 OR14L1PQ8NHC6 308 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 RAB40AQ8WXH6 277 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 EDAQ92838 391 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 SLC25A28Q96A46 364 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 TMEM159Q96B96 161 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 ARHGAP9Q9BRR9 750 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 SLC35B3Q9H1N7 401 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 KCNE5Q9UJ90 142 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 KCND3Q9UK17 655 aa5.29□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF346Q9UL40 294 aaKnown RBP5.29□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF638Q14966 1978 aaKnown RBP5.29□□□□□ -1.56
SCN1A-216ENST00000637968 DDX60Q8IY21 1712 aaKnown RBP5.29□□□□□ -1.56
SCN1A-216ENST00000637968 GEMIN2O14893 280 aaKnown RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF264O43296 627 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 NUDT21O43809 227 aaKnown RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 PQBP1O60828 265 aaKnown RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 GASTP01350 101 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 HLA-AP01891 365 aaKnown RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 AGTR2P50052 363 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 HTR6P50406 440 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 TGM3Q08188 693 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 SLC14A1Q13336 389 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 CPSF6Q16630 551 aaKnown RBP eCLIP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 EOGTQ5NDL2 527 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 DHRS11Q6UWP2 260 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 LRRC56Q8IYG6 542 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 GALNT16Q8N428 558 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 ZBTB2Q8N680 514 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 OR1L6Q8NGR2 347 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 OR13C8Q8NGS7 320 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 OR4K15Q8NH41 348 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 ABHD3Q8WU67 409 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 LIN37Q96GY3 246 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 CLUHP3Q96NS8 147 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 ACTR3CQ9C0K3 210 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 OR51I1Q9H343 314 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 CLMPQ9H6B4 373 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 DDIT4Q9NX09 232 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 SLC25A37Q9NYZ2 338 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 CACFD1Q9UGQ2 172 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 ADAM29Q9UKF5 820 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 PLCH1Q4KWH8 1693 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 A0A1B0GV50 99 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 A0A1W2PQ45 241 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 A0A1W2PQY0 241 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 MEIS3P2A8K0S8 358 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 J3QLW9 94 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 PIRO00625 290 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 GABRDO14764 452 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 CTDSPLO15194 276 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 OR1F1O43749 312 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 CST3P01034 146 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 BCHEP06276 602 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 C1SP09871 688 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 TRGC1P0CF51 173 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 SLC25A4P12235 298 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 IRF2P14316 349 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF19P17023 458 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 TEAD1P28347 426 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 PXNP49023 591 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 NAAAQ02083 359 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 CACNG1Q06432 222 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 SPRYD7Q5W111 196 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 SLC16A9Q7RTY1 509 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 AMIGO3Q86WK7 504 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 113.2 ms