RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 CCL19Q99731 98 aa15.66■□□□□ 0.1
CLN3-247ENST00000636351 YY1AP1Q9H869 796 aa15.66■□□□□ 0.1
CLN3-247ENST00000636351 HIF3AQ9Y2N7 669 aa15.66■□□□□ 0.1
CLN3-247ENST00000636351 LYVE1Q9Y5Y7 322 aa15.66■□□□□ 0.1
CLN3-247ENST00000636351 CDC42EP2O14613 210 aa15.65■□□□□ 0.1
CLN3-247ENST00000636351 SMAD7O15105 426 aaKnown RBP15.65■□□□□ 0.1
CLN3-247ENST00000636351 UPK3AO75631 287 aa15.65■□□□□ 0.1
CLN3-247ENST00000636351 ZNF432O94892 652 aa15.65■□□□□ 0.1
CLN3-247ENST00000636351 BCL10O95999 233 aa15.65■□□□□ 0.1
CLN3-247ENST00000636351 CRYGSP22914 178 aa15.65■□□□□ 0.1
CLN3-247ENST00000636351 MPGP29372 298 aa15.65■□□□□ 0.1
CLN3-247ENST00000636351 OMPP47874 163 aa15.65■□□□□ 0.1
CLN3-247ENST00000636351 CSNK1A1P48729 337 aa15.65■□□□□ 0.1
CLN3-247ENST00000636351 ROR2Q01974 943 aaKnown RBP15.65■□□□□ 0.1
CLN3-247ENST00000636351 PPP1R8Q12972 351 aaKnown RBP15.65■□□□□ 0.1
CLN3-247ENST00000636351 LAPTM4AQ15012 233 aa15.65■□□□□ 0.1
CLN3-247ENST00000636351 TAF11Q15544 211 aa15.65■□□□□ 0.1
CLN3-247ENST00000636351 ACKR1Q16570 336 aa15.65■□□□□ 0.1
CLN3-247ENST00000636351 TMPRSS11FQ6ZWK6 438 aa15.65■□□□□ 0.1
CLN3-247ENST00000636351 HDDC2Q7Z4H3 204 aa15.65■□□□□ 0.1
CLN3-247ENST00000636351 YTHDF3Q7Z739 585 aaKnown RBP15.65■□□□□ 0.1
CLN3-247ENST00000636351 TMEM123Q8N131 208 aa15.65■□□□□ 0.1
CLN3-247ENST00000636351 ZNF433Q8N7K0 673 aaPredicted RBP15.65■□□□□ 0.1
CLN3-247ENST00000636351 PERPQ96FX8 193 aa15.65■□□□□ 0.1
CLN3-247ENST00000636351 ADAD1Q96M93 576 aaKnown RBP15.65■□□□□ 0.1
CLN3-247ENST00000636351 FUZQ9BT04 418 aa15.65■□□□□ 0.1
CLN3-247ENST00000636351 B3GAT2Q9NPZ5 323 aa15.65■□□□□ 0.1
CLN3-247ENST00000636351 U3KQV3 271 aa15.65■□□□□ 0.1
CLN3-247ENST00000636351 UNC119BA6NIH7 251 aa15.64■□□□□ 0.09
CLN3-247ENST00000636351 M0R3G1 203 aa15.64■□□□□ 0.09
CLN3-247ENST00000636351 FKBP6O75344 327 aa15.64■□□□□ 0.09
CLN3-247ENST00000636351 CCNB2O95067 398 aa15.64■□□□□ 0.09
CLN3-247ENST00000636351 ITGA5P08648 1049 aa15.64■□□□□ 0.09
CLN3-247ENST00000636351 RPL4P36578 427 aaKnown RBP15.64■□□□□ 0.09
CLN3-247ENST00000636351 LIMS1P48059 325 aa15.64■□□□□ 0.09
CLN3-247ENST00000636351 FOXG1P55316 489 aaPredicted RBP15.64■□□□□ 0.09
CLN3-247ENST00000636351 CTXN1P60606 82 aa15.64■□□□□ 0.09
CLN3-247ENST00000636351 PRPS1P60891 318 aa15.64■□□□□ 0.09
CLN3-247ENST00000636351 RPS4XP62701 263 aaKnown RBP15.64■□□□□ 0.09
CLN3-247ENST00000636351 TGFBR3Q03167 851 aa15.64■□□□□ 0.09
CLN3-247ENST00000636351 ANKDD1AQ495B1 522 aa15.64■□□□□ 0.09
CLN3-247ENST00000636351 ZBED5Q49AG3 693 aa15.64■□□□□ 0.09
CLN3-247ENST00000636351 ALPK2Q86TB3 2170 aa15.64■□□□□ 0.09
CLN3-247ENST00000636351 WFDC8Q8IUA0 241 aa15.64■□□□□ 0.09
CLN3-247ENST00000636351 OR9Q2Q8NGE9 314 aa15.64■□□□□ 0.09
CLN3-247ENST00000636351 OR6X1Q8NH79 312 aa15.64■□□□□ 0.09
CLN3-247ENST00000636351 FANK1Q8TC84 345 aa15.64■□□□□ 0.09
CLN3-247ENST00000636351 HS3ST6Q96QI5 342 aa15.64■□□□□ 0.09
CLN3-247ENST00000636351 TNFRSF13CQ96RJ3 184 aa15.64■□□□□ 0.09
CLN3-247ENST00000636351 ULBP2Q9BZM5 246 aa15.64■□□□□ 0.09
CLN3-247ENST00000636351 LINC00470Q9BZP3 86 aa15.64■□□□□ 0.09
CLN3-247ENST00000636351 OR10A4Q9H209 315 aa15.64■□□□□ 0.09
CLN3-247ENST00000636351 VNN3Q9NY84 501 aa15.64■□□□□ 0.09
CLN3-247ENST00000636351 TRIM64A6NGJ6 449 aa15.63■□□□□ 0.09
CLN3-247ENST00000636351 TRIM64BA6NI03 449 aa15.63■□□□□ 0.09
CLN3-247ENST00000636351 E2F6O75461 281 aa15.63■□□□□ 0.09
CLN3-247ENST00000636351 IGHG1P01857 330 aa15.63■□□□□ 0.09
CLN3-247ENST00000636351 PCSK6P29122 969 aa15.63■□□□□ 0.09
CLN3-247ENST00000636351 CLRN1P58418 232 aa15.63■□□□□ 0.09
CLN3-247ENST00000636351 C20orf196Q8IYI0 205 aa15.63■□□□□ 0.09
CLN3-247ENST00000636351 LINC00471Q8N535 108 aa15.63■□□□□ 0.09
CLN3-247ENST00000636351 OR4C15Q8NGM1 316 aa15.63■□□□□ 0.09
CLN3-247ENST00000636351 GNPDA2Q8TDQ7 276 aa15.63■□□□□ 0.09
CLN3-247ENST00000636351 ZNF566Q969W8 418 aa15.63■□□□□ 0.09
CLN3-247ENST00000636351 UTP4Q969X6 686 aaKnown RBP15.63■□□□□ 0.09
CLN3-247ENST00000636351 TSPAN19P0C672 248 aa15.62■□□□□ 0.09
CLN3-247ENST00000636351 FPR3P25089 353 aa15.62■□□□□ 0.09
CLN3-247ENST00000636351 CCNIQ14094 377 aa15.62■□□□□ 0.09
CLN3-247ENST00000636351 OR7E24Q6IFN5 339 aa15.62■□□□□ 0.09
CLN3-247ENST00000636351 PGBD2Q6P3X8 592 aa15.62■□□□□ 0.09
CLN3-247ENST00000636351 KLHL24Q6TFL4 600 aa15.62■□□□□ 0.09
CLN3-247ENST00000636351 PRSS57Q6UWY2 283 aa15.62■□□□□ 0.09
CLN3-247ENST00000636351 C22orf34Q6ZV56 151 aa15.62■□□□□ 0.09
CLN3-247ENST00000636351 LINGO2Q7L985 606 aa15.62■□□□□ 0.09
CLN3-247ENST00000636351 ZER1Q7Z7L7 766 aa15.62■□□□□ 0.09
CLN3-247ENST00000636351 PRIMA1Q86XR5 153 aa15.62■□□□□ 0.09
CLN3-247ENST00000636351 WDFY1Q8IWB7 410 aa15.62■□□□□ 0.09
CLN3-247ENST00000636351 AQP11Q8NBQ7 271 aa15.62■□□□□ 0.09
CLN3-247ENST00000636351 C1orf162Q8NEQ5 155 aaPredicted RBP15.62■□□□□ 0.09
CLN3-247ENST00000636351 ASB10Q8WXI3 467 aa15.62■□□□□ 0.09
CLN3-247ENST00000636351 MUCL1Q96DR8 90 aa15.62■□□□□ 0.09
CLN3-247ENST00000636351 SLC25A44Q96H78 314 aaPredicted RBP15.62■□□□□ 0.09
CLN3-247ENST00000636351 USB1Q9BQ65 265 aaKnown RBP15.62■□□□□ 0.09
CLN3-247ENST00000636351 BDH2Q9BUT1 245 aa15.62■□□□□ 0.09
CLN3-247ENST00000636351 KATNB1Q9BVA0 655 aa15.62■□□□□ 0.09
CLN3-247ENST00000636351 TXNIPQ9H3M7 391 aa15.62■□□□□ 0.09
CLN3-247ENST00000636351 CRLF2Q9HC73 371 aa15.62■□□□□ 0.09
CLN3-247ENST00000636351 GPR35Q9HC97 309 aa15.62■□□□□ 0.09
CLN3-247ENST00000636351 STX18Q9P2W9 335 aaKnown RBP15.62■□□□□ 0.09
CLN3-247ENST00000636351 JMJD1CQ15652 2540 aa15.62■□□□□ 0.09
CLN3-247ENST00000636351 PDLIM1O00151 329 aa15.61■□□□□ 0.09
CLN3-247ENST00000636351 TIPRLO75663 272 aa15.61■□□□□ 0.09
CLN3-247ENST00000636351 NDUFB2O95178 105 aa15.61■□□□□ 0.09
CLN3-247ENST00000636351 LOXP28300 417 aaPredicted RBP15.61■□□□□ 0.09
CLN3-247ENST00000636351 HMGA2P52926 109 aa15.61■□□□□ 0.09
CLN3-247ENST00000636351 SH3BGRP55822 239 aaPredicted RBP15.61■□□□□ 0.09
CLN3-247ENST00000636351 TAB1Q15750 504 aa15.61■□□□□ 0.09
CLN3-247ENST00000636351 CEACAM16Q2WEN9 425 aa15.61■□□□□ 0.09
CLN3-247ENST00000636351 NHLRC1Q6VVB1 395 aa15.61■□□□□ 0.09
CLN3-247ENST00000636351 C20orf204Q6ZNR8 217 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms