RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 KLHL24Q6TFL4 600 aa15.9■□□□□ 0.14
CLN3-239ENST00000628023 NHLRC1Q6VVB1 395 aa15.9■□□□□ 0.14
CLN3-239ENST00000628023 YTHDF3Q7Z739 585 aaKnown RBP15.9■□□□□ 0.14
CLN3-239ENST00000628023 WFDC8Q8IUA0 241 aa15.9■□□□□ 0.14
CLN3-239ENST00000628023 C20orf196Q8IYI0 205 aa15.9■□□□□ 0.14
CLN3-239ENST00000628023 AQP11Q8NBQ7 271 aa15.9■□□□□ 0.14
CLN3-239ENST00000628023 OR10G2Q8NGC3 310 aa15.9■□□□□ 0.14
CLN3-239ENST00000628023 ASB10Q8WXI3 467 aa15.9■□□□□ 0.14
CLN3-239ENST00000628023 SLCO4A1Q96BD0 722 aa15.9■□□□□ 0.14
CLN3-239ENST00000628023 SLC25A44Q96H78 314 aaPredicted RBP15.9■□□□□ 0.14
CLN3-239ENST00000628023 LRR1Q96L50 414 aa15.9■□□□□ 0.14
CLN3-239ENST00000628023 KATNB1Q9BVA0 655 aa15.9■□□□□ 0.14
CLN3-239ENST00000628023 TXNIPQ9H3M7 391 aa15.9■□□□□ 0.14
CLN3-239ENST00000628023 SIGLEC7Q9Y286 467 aa15.9■□□□□ 0.14
CLN3-239ENST00000628023 NPIPB13A6NJU9 1138 aa15.89■□□□□ 0.13
CLN3-239ENST00000628023 NPIPB4C9JG80 1138 aa15.89■□□□□ 0.13
CLN3-239ENST00000628023 DEAF1O75398 565 aaPredicted RBP15.89■□□□□ 0.13
CLN3-239ENST00000628023 SH3BGRP55822 239 aaPredicted RBP15.89■□□□□ 0.13
CLN3-239ENST00000628023 MICAQ29983 383 aa15.89■□□□□ 0.13
CLN3-239ENST00000628023 CEACAM16Q2WEN9 425 aa15.89■□□□□ 0.13
CLN3-239ENST00000628023 C1orf94Q6P1W5 598 aa15.89■□□□□ 0.13
CLN3-239ENST00000628023 LINGO2Q7L985 606 aa15.89■□□□□ 0.13
CLN3-239ENST00000628023 PAPD5Q8NDF8 572 aaKnown RBP15.89■□□□□ 0.13
CLN3-239ENST00000628023 C1orf162Q8NEQ5 155 aaPredicted RBP15.89■□□□□ 0.13
CLN3-239ENST00000628023 NOXO1Q8NFA2 376 aa15.89■□□□□ 0.13
CLN3-239ENST00000628023 HSD17B8Q92506 261 aa15.89■□□□□ 0.13
CLN3-239ENST00000628023 MUCL1Q96DR8 90 aa15.89■□□□□ 0.13
CLN3-239ENST00000628023 GPA33Q99795 319 aa15.89■□□□□ 0.13
CLN3-239ENST00000628023 CRLF2Q9HC73 371 aa15.89■□□□□ 0.13
CLN3-239ENST00000628023 GPR35Q9HC97 309 aa15.89■□□□□ 0.13
CLN3-239ENST00000628023 DNAJB9Q9UBS3 223 aa15.89■□□□□ 0.13
CLN3-239ENST00000628023 IL20RAQ9UHF4 553 aa15.89■□□□□ 0.13
CLN3-239ENST00000628023 ABCA4P78363 2273 aa15.89■□□□□ 0.13
CLN3-239ENST00000628023 OR5H1A6NKK0 313 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 KLF4O43474 513 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 IGHMP01871 453 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 CD14P08571 375 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 PGA4P0DJD7 388 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 PGA3P0DJD8 388 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 ACADSP16219 412 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 ACVR1BP36896 505 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 ARHGDIAP52565 204 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 RPL27P61353 136 aaKnown RBP15.88■□□□□ 0.13
CLN3-239ENST00000628023 ERVK-25P63136 954 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 CD47Q08722 323 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 TSPAN31Q12999 210 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 FHL1Q13642 323 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 KPNB1Q14974 876 aaKnown RBP15.88■□□□□ 0.13
CLN3-239ENST00000628023 DAZAP2Q15038 168 aaPredicted RBP15.88■□□□□ 0.13
CLN3-239ENST00000628023 PPA1Q15181 289 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 TAB1Q15750 504 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 GABRA6Q16445 453 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 TIMM23BQ5SRD1 257 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 PHYHD1Q5SRE7 291 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 FAM205BPQ63HN1 556 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 SMARCD3Q6STE5 483 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 P2RY8Q86VZ1 359 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 WDFY1Q8IWB7 410 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 LRRC75AQ8NAA5 344 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 OR52N5Q8NH56 324 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 GIPC3Q8TF64 312 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 TSPAN32Q96QS1 320 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 CXXC4Q9H2H0 198 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 NGBQ9NPG2 151 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 GLTPQ9NZD2 209 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 GRHPRQ9UBQ7 328 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 ZNF346Q9UL40 294 aaKnown RBP15.88■□□□□ 0.13
CLN3-239ENST00000628023 POFUT2Q9Y2G5 429 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 AP4S1Q9Y587 144 aa15.88■□□□□ 0.13
CLN3-239ENST00000628023 MAP1AP78559 2803 aaPredicted RBP15.88■□□□□ 0.13
CLN3-239ENST00000628023 ALPK2Q86TB3 2170 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 A6NIZ1 184 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 RPL36A-HNRNPH2H7BZ11 118 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 XKRYO14609 159 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 PTP4A3O75365 173 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 TRMUO75648 421 aaKnown RBP15.87■□□□□ 0.13
CLN3-239ENST00000628023 GASTP01350 101 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 THBDP07204 575 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 FCGR1AP12314 374 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 NR2C1P13056 603 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 CRYGSP22914 178 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 SLC6A6P31641 620 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 GSSP48637 474 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 RAP1BP61224 184 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 RAP1AP62834 184 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 ZSCAN26Q16670 478 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 ARMC4Q5T2S8 1044 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 CDC20BQ86Y33 519 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 TGIF2LYQ8IUE0 185 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 C17orf78Q8N4C9 275 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 SYT14Q8NB59 555 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 OR52L1Q8NGH7 329 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 OR1K1Q8NGR3 316 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 TMEM54Q969K7 222 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 GTPBP3Q969Y2 492 aaKnown RBP15.87■□□□□ 0.13
CLN3-239ENST00000628023 ZNF570Q96NI8 536 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 OR52D1Q9H346 318 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 PDP1Q9P0J1 537 aaPredicted RBP15.87■□□□□ 0.13
CLN3-239ENST00000628023 MGAT4BQ9UQ53 548 aa15.87■□□□□ 0.13
CLN3-239ENST00000628023 ADAM18Q9Y3Q7 739 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms