RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 GMPPBQ9Y5P6 360 aa13.03□□□□□ -0.32
CD48-203ENST00000613788 H0YAE9 185 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 DVL2O14641 736 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 KRT33AO76009 404 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 RENP00797 406 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 PGA4P0DJD7 388 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 PGA3P0DJD8 388 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 ZNF3P17036 446 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 GGT2P36268 569 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 OR3A2P47893 321 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 CSNK1A1P48729 337 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.02□□□□□ -0.33
CD48-203ENST00000613788 ITGADQ13349 1161 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 KEAP1Q14145 624 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 MESTQ5EB52 335 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 ZNF362Q5T0B9 420 aaPredicted RBP13.02□□□□□ -0.33
CD48-203ENST00000613788 CARD17Q5XLA6 110 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 C12orf73Q69YU5 71 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 VWA1Q6PCB0 445 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 NCCRP1Q6ZVX7 275 aaPredicted RBP13.02□□□□□ -0.33
CD48-203ENST00000613788 BTLAQ7Z6A9 289 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 GPR137CQ8N3F9 429 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 POMGNT2Q8NAT1 580 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 OR4K13Q8NH42 304 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 HDAC2Q92769 488 aaKnown RBP13.02□□□□□ -0.33
CD48-203ENST00000613788 STARD4Q96DR4 205 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 SNX18Q96RF0 628 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 KCNK17Q96T54 332 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 ADI1Q9BV57 179 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 MRPL13Q9BYD1 178 aaKnown RBP13.02□□□□□ -0.33
CD48-203ENST00000613788 LINC00470Q9BZP3 86 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 SLCO5A1Q9H2Y9 848 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 PIGMQ9H3S5 423 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 B3GAT2Q9NPZ5 323 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 ERRFI1Q9UJM3 462 aaPredicted RBP13.02□□□□□ -0.33
CD48-203ENST00000613788 NDRG4Q9ULP0 352 aaKnown RBP13.02□□□□□ -0.33
CD48-203ENST00000613788 POLEQ07864 2286 aa13.02□□□□□ -0.33
CD48-203ENST00000613788 FAM208BQ5VWN6 2430 aa13.01□□□□□ -0.33
CD48-203ENST00000613788 PRSS37A4D1T9 235 aa13.01□□□□□ -0.33
CD48-203ENST00000613788 E9PQ18 207 aa13.01□□□□□ -0.33
CD48-203ENST00000613788 SURF4O15260 269 aa13.01□□□□□ -0.33
CD48-203ENST00000613788 CNOT4O95628 575 aaKnown RBP13.01□□□□□ -0.33
CD48-203ENST00000613788 CD8BP10966 210 aa13.01□□□□□ -0.33
CD48-203ENST00000613788 PAICSP22234 425 aaKnown RBP13.01□□□□□ -0.33
CD48-203ENST00000613788 CAPGP40121 348 aa13.01□□□□□ -0.33
CD48-203ENST00000613788 CDKN2AP42771 156 aaKnown RBP13.01□□□□□ -0.33
CD48-203ENST00000613788 ADARB1P78563 741 aaKnown RBP13.01□□□□□ -0.33
CD48-203ENST00000613788 RUNX1T1Q06455 604 aa13.01□□□□□ -0.33
CD48-203ENST00000613788 THEM4Q5T1C6 240 aa13.01□□□□□ -0.33
CD48-203ENST00000613788 LEG1Q6P5S2 330 aa13.01□□□□□ -0.33
CD48-203ENST00000613788 ABHD12BQ7Z5M8 362 aaPredicted RBP13.01□□□□□ -0.33
CD48-203ENST00000613788 C20orf196Q8IYI0 205 aa13.01□□□□□ -0.33
CD48-203ENST00000613788 DEPDC4Q8N2C3 294 aa13.01□□□□□ -0.33
CD48-203ENST00000613788 UBE2J2Q8N2K1 259 aa13.01□□□□□ -0.33
CD48-203ENST00000613788 SYT14Q8NB59 555 aa13.01□□□□□ -0.33
CD48-203ENST00000613788 NOXO1Q8NFA2 376 aa13.01□□□□□ -0.33
CD48-203ENST00000613788 TRUB1Q8WWH5 349 aaKnown RBP13.01□□□□□ -0.33
CD48-203ENST00000613788 ASB5Q8WWX0 329 aa13.01□□□□□ -0.33
CD48-203ENST00000613788 TMEM54Q969K7 222 aa13.01□□□□□ -0.33
CD48-203ENST00000613788 CCDC120Q96HB5 630 aa13.01□□□□□ -0.33
CD48-203ENST00000613788 NMNAT3Q96T66 252 aa13.01□□□□□ -0.33
CD48-203ENST00000613788 PITX2Q99697 317 aa13.01□□□□□ -0.33
CD48-203ENST00000613788 APOL4Q9BPW4 351 aa13.01□□□□□ -0.33
CD48-203ENST00000613788 IMPAD1Q9NX62 359 aa13.01□□□□□ -0.33
CD48-203ENST00000613788 GLTPQ9NZD2 209 aa13.01□□□□□ -0.33
CD48-203ENST00000613788 UPB1Q9UBR1 384 aa13.01□□□□□ -0.33
CD48-203ENST00000613788 RNF6Q9Y252 685 aa13.01□□□□□ -0.33
CD48-203ENST00000613788 SLC5A6Q9Y289 635 aa13.01□□□□□ -0.33
CD48-203ENST00000613788 SLC22A23A1A5C7 686 aa13□□□□□ -0.33
CD48-203ENST00000613788 SMNDC1O75940 238 aaKnown RBP eCLIP13□□□□□ -0.33
CD48-203ENST00000613788 CGAP01215 116 aa13□□□□□ -0.33
CD48-203ENST00000613788 BMP5P22003 454 aa13□□□□□ -0.33
CD48-203ENST00000613788 CHRNB4P30926 498 aa13□□□□□ -0.33
CD48-203ENST00000613788 PCYT1AP49585 367 aa13□□□□□ -0.33
CD48-203ENST00000613788 CD47Q08722 323 aa13□□□□□ -0.33
CD48-203ENST00000613788 HIST3H3Q16695 136 aa13□□□□□ -0.33
CD48-203ENST00000613788 TSPO2Q5TGU0 170 aa13□□□□□ -0.33
CD48-203ENST00000613788 FBXW9Q5XUX1 488 aa13□□□□□ -0.33
CD48-203ENST00000613788 PTCHD4Q6ZW05 846 aa13□□□□□ -0.33
CD48-203ENST00000613788 CCDC71Q8IV32 467 aaPredicted RBP13□□□□□ -0.33
CD48-203ENST00000613788 SLC37A3Q8NCC5 494 aa13□□□□□ -0.33
CD48-203ENST00000613788 NPEPL1Q8NDH3 523 aa13□□□□□ -0.33
CD48-203ENST00000613788 SDR9C7Q8NEX9 313 aa13□□□□□ -0.33
CD48-203ENST00000613788 FAM81AQ8TBF8 368 aa13□□□□□ -0.33
CD48-203ENST00000613788 TFAP2CQ92754 450 aa13□□□□□ -0.33
CD48-203ENST00000613788 FN3KQ9H479 309 aa13□□□□□ -0.33
CD48-203ENST00000613788 ASB6Q9NWX5 421 aa13□□□□□ -0.33
CD48-203ENST00000613788 VSX1Q9NZR4 365 aaPredicted RBP13□□□□□ -0.33
CD48-203ENST00000613788 FOXD3Q9UJU5 478 aaPredicted RBP13□□□□□ -0.33
CD48-203ENST00000613788 CFAP46Q8IYW2 2715 aa13□□□□□ -0.33
CD48-203ENST00000613788 PHF3Q92576 2039 aaKnown RBP13□□□□□ -0.33
CD48-203ENST00000613788 ARHGAP21Q5T5U3 1957 aa13□□□□□ -0.33
CD48-203ENST00000613788 RP1L1Q8IWN7 2480 aaPredicted RBP12.99□□□□□ -0.33
CD48-203ENST00000613788 M0R3G1 203 aa12.99□□□□□ -0.33
CD48-203ENST00000613788 MSTNO14793 375 aa12.99□□□□□ -0.33
CD48-203ENST00000613788 SLC2A10O95528 541 aa12.99□□□□□ -0.33
CD48-203ENST00000613788 QDPRP09417 244 aa12.99□□□□□ -0.33
CD48-203ENST00000613788 CRABP1P29762 137 aa12.99□□□□□ -0.33
CD48-203ENST00000613788 ADORA2A-AS1P86434 159 aa12.99□□□□□ -0.33
CD48-203ENST00000613788 IL18R1Q13478 541 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms