RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 PRSS23O95084 383 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 CRYAAP02489 173 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 ACADSP16219 412 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 ARR3P36575 388 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 CTXN1P60606 82 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 VLDLRP98155 873 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 CHRNB3Q05901 458 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 LAPTM4AQ15012 233 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 FAM98BQ52LJ0 330 aaKnown RBP16.93■□□□□ 0.3
UPF1-212ENST00000601689 PODNL1Q6PEZ8 512 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 CYP2R1Q6VVX0 501 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 TMPRSS11FQ6ZWK6 438 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 LINGO2Q7L985 606 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 PIWIL3Q7Z3Z3 882 aaKnown RBP16.93■□□□□ 0.3
UPF1-212ENST00000601689 ZDHHC21Q8IVQ6 265 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 FAM169BQ8N8A8 192 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 IL17RDQ8NFM7 739 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 KBTBD8Q8NFY9 601 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 OR51A7Q8NH64 312 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 SLC7A13Q8TCU3 470 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 TMEM54Q969K7 222 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 SLC38A2Q96QD8 506 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 RBP7Q96R05 134 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 KCNN2Q9H2S1 579 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 TXNIPQ9H3M7 391 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 TAS2R1Q9NYW7 299 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 FBXL3Q9UKT7 428 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 CSMD1Q96PZ7 3565 aa16.93■□□□□ 0.3
UPF1-212ENST00000601689 A6NIZ1 184 aa16.92■□□□□ 0.3
UPF1-212ENST00000601689 KRT36O76013 467 aa16.92■□□□□ 0.3
UPF1-212ENST00000601689 QDPRP09417 244 aa16.92■□□□□ 0.3
UPF1-212ENST00000601689 T-ENOLP0DO92 83 aa16.92■□□□□ 0.3
UPF1-212ENST00000601689 CD79AP11912 226 aa16.92■□□□□ 0.3
UPF1-212ENST00000601689 BMP4P12644 408 aa16.92■□□□□ 0.3
UPF1-212ENST00000601689 RAP1BP61224 184 aa16.92■□□□□ 0.3
UPF1-212ENST00000601689 RPS4XP62701 263 aaKnown RBP16.92■□□□□ 0.3
UPF1-212ENST00000601689 RAP1AP62834 184 aa16.92■□□□□ 0.3
UPF1-212ENST00000601689 ZBED5Q49AG3 693 aa16.92■□□□□ 0.3
UPF1-212ENST00000601689 AGAP6Q5VW22 663 aa16.92■□□□□ 0.3
UPF1-212ENST00000601689 NHLRC1Q6VVB1 395 aa16.92■□□□□ 0.3
UPF1-212ENST00000601689 SPNS3Q6ZMD2 512 aa16.92■□□□□ 0.3
UPF1-212ENST00000601689 LRRC75A-AS1Q8N1F1 130 aa16.92■□□□□ 0.3
UPF1-212ENST00000601689 OR52J3Q8NH60 311 aa16.92■□□□□ 0.3
UPF1-212ENST00000601689 SMAP2Q8WU79 429 aaPredicted RBP16.92■□□□□ 0.3
UPF1-212ENST00000601689 ASB10Q8WXI3 467 aa16.92■□□□□ 0.3
UPF1-212ENST00000601689 GTPBP3Q969Y2 492 aaKnown RBP16.92■□□□□ 0.3
UPF1-212ENST00000601689 ASB9Q96DX5 294 aa16.92■□□□□ 0.3
UPF1-212ENST00000601689 TRMT61AQ96FX7 289 aaKnown RBP16.92■□□□□ 0.3
UPF1-212ENST00000601689 SEPHS2Q99611 448 aa16.92■□□□□ 0.3
UPF1-212ENST00000601689 DENND2DQ9H6A0 471 aaPredicted RBP16.92■□□□□ 0.3
UPF1-212ENST00000601689 MAGIXQ9H6Y5 334 aa16.92■□□□□ 0.3
UPF1-212ENST00000601689 LAMP3Q9UQV4 416 aa16.92■□□□□ 0.3
UPF1-212ENST00000601689 ATP23Q9Y6H3 246 aa16.92■□□□□ 0.3
UPF1-212ENST00000601689 ROS1P08922 2347 aa16.92■□□□□ 0.3
UPF1-212ENST00000601689 CCDC168Q8NDH2 2452 aa16.92■□□□□ 0.3
UPF1-212ENST00000601689 CADP27708 2225 aa16.92■□□□□ 0.3
UPF1-212ENST00000601689 MYO9AB2RTY4 2548 aa16.92■□□□□ 0.3
UPF1-212ENST00000601689 XKRYO14609 159 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 DHHO43323 396 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 UBOX5O94941 541 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 DIRAS1O95057 198 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 UBL3O95164 117 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 TSPAN19P0C672 248 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 PGA4P0DJD7 388 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 PGA3P0DJD8 388 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 OR8G3PP0DMU2 310 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 CBR1P16152 277 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 HOXB6P17509 224 aaKnown RBP16.91■□□□□ 0.3
UPF1-212ENST00000601689 MAKP20794 623 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 GPR4P46093 362 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 RPL27P61353 136 aaKnown RBP16.91■□□□□ 0.3
UPF1-212ENST00000601689 CD47Q08722 323 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 TOP3AQ13472 1001 aaPredicted RBP16.91■□□□□ 0.3
UPF1-212ENST00000601689 PHYHD1Q5SRE7 291 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 SHEQ5VZ18 495 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 LCN8Q6JVE9 175 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 TBPL2Q6SJ96 375 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 SEZ6L2Q6UXD5 910 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 DPPA2Q7Z7J5 298 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 FBXL14Q8N1E6 418 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 LINC00471Q8N535 108 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 FAM86B1Q8N7N1 296 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 NOXO1Q8NFA2 376 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 MOSPD2Q8NHP6 518 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 FAM46AQ96IP4 442 aaKnown RBP16.91■□□□□ 0.3
UPF1-212ENST00000601689 KATNB1Q9BVA0 655 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 CXXC4Q9H2H0 198 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 GRHPRQ9UBQ7 328 aa16.91■□□□□ 0.3
UPF1-212ENST00000601689 RAI1Q7Z5J4 1906 aaPredicted RBP16.9■□□□□ 0.3
UPF1-212ENST00000601689 TRAV27A0A087WT01 109 aa16.9■□□□□ 0.3
UPF1-212ENST00000601689 OR10H3O60404 316 aa16.9■□□□□ 0.3
UPF1-212ENST00000601689 TRMUO75648 421 aaKnown RBP16.9■□□□□ 0.3
UPF1-212ENST00000601689 ATP5HO75947 161 aa16.9■□□□□ 0.3
UPF1-212ENST00000601689 PDE5AO76074 875 aa16.9■□□□□ 0.3
UPF1-212ENST00000601689 RAB36O95755 333 aa16.9■□□□□ 0.3
UPF1-212ENST00000601689 RRM2P31350 389 aa16.9■□□□□ 0.3
UPF1-212ENST00000601689 ACVR1BP36896 505 aa16.9■□□□□ 0.3
UPF1-212ENST00000601689 NKX6-1P78426 367 aaPredicted RBP16.9■□□□□ 0.3
UPF1-212ENST00000601689 TRAP1Q12931 704 aaKnown RBP16.9■□□□□ 0.3
UPF1-212ENST00000601689 GSG1Q2KHT4 349 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms