RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 TEX15Q9BXT5 2789 aa13.3□□□□□ -0.28
LIG1-219ENST00000600055 ZNF503-AS2A6NEH8 195 aa13.29□□□□□ -0.28
LIG1-219ENST00000600055 ABCD4O14678 606 aa13.29□□□□□ -0.28
LIG1-219ENST00000600055 GSC2O15499 205 aa13.29□□□□□ -0.28
LIG1-219ENST00000600055 WNT11O96014 354 aa13.29□□□□□ -0.28
LIG1-219ENST00000600055 IGHG1P01857 330 aa13.29□□□□□ -0.28
LIG1-219ENST00000600055 RAF1P04049 648 aa13.29□□□□□ -0.28
LIG1-219ENST00000600055 QDPRP09417 244 aa13.29□□□□□ -0.28
LIG1-219ENST00000600055 ACADSP16219 412 aa13.29□□□□□ -0.28
LIG1-219ENST00000600055 CD53P19397 219 aa13.29□□□□□ -0.28
LIG1-219ENST00000600055 DNASE1P24855 282 aa13.29□□□□□ -0.28
LIG1-219ENST00000600055 MAGEA2P43356 314 aa13.29□□□□□ -0.28
LIG1-219ENST00000600055 DAP3P51398 398 aaKnown RBP13.29□□□□□ -0.28
LIG1-219ENST00000600055 CLRN1P58418 232 aa13.29□□□□□ -0.28
LIG1-219ENST00000600055 SMIM11AP58511 58 aa13.29□□□□□ -0.28
LIG1-219ENST00000600055 UBE2NP61088 152 aaKnown RBP13.29□□□□□ -0.28
LIG1-219ENST00000600055 ZBED5Q49AG3 693 aa13.29□□□□□ -0.28
LIG1-219ENST00000600055 CCDC121Q6ZUS5 278 aa13.29□□□□□ -0.28
LIG1-219ENST00000600055 SSX8Q7RTT4 187 aa13.29□□□□□ -0.28
LIG1-219ENST00000600055 ZER1Q7Z7L7 766 aa13.29□□□□□ -0.28
LIG1-219ENST00000600055 SYT14Q8NB59 555 aa13.29□□□□□ -0.28
LIG1-219ENST00000600055 MAGEE2Q8TD90 523 aaPredicted RBP13.29□□□□□ -0.28
LIG1-219ENST00000600055 AKAP1Q92667 903 aaKnown RBP eCLIP13.29□□□□□ -0.28
LIG1-219ENST00000600055 HDAC2Q92769 488 aaKnown RBP13.29□□□□□ -0.28
LIG1-219ENST00000600055 ALPK1Q96QP1 1244 aa13.29□□□□□ -0.28
LIG1-219ENST00000600055 TSPAN32Q96QS1 320 aa13.29□□□□□ -0.28
LIG1-219ENST00000600055 MRPL13Q9BYD1 178 aaKnown RBP13.29□□□□□ -0.28
LIG1-219ENST00000600055 TXNIPQ9H3M7 391 aa13.29□□□□□ -0.28
LIG1-219ENST00000600055 MAGIXQ9H6Y5 334 aa13.29□□□□□ -0.28
LIG1-219ENST00000600055 POLQO75417 2590 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 ARPC4-TTLL3A0A0A6YYG9 625 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 SHISA9B4DS77 424 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 PTP4A3O75365 173 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 STAMBPO95630 424 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 B4GALT1P15291 398 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 CD40P25942 277 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 ERFP50548 548 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 RPL27P61353 136 aaKnown RBP13.28□□□□□ -0.28
LIG1-219ENST00000600055 ERVK-25P63136 954 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 CHRNB3Q05901 458 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 PPP1R8Q12972 351 aaKnown RBP13.28□□□□□ -0.28
LIG1-219ENST00000600055 KEAP1Q14145 624 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 FAM98BQ52LJ0 330 aaKnown RBP13.28□□□□□ -0.28
LIG1-219ENST00000600055 KLHL17Q6TDP4 642 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 TMEM108Q6UXF1 575 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 ZNF813Q6ZN06 617 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 ADGRG5Q8IZF4 528 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 NOXO1Q8NFA2 376 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 HTRA1Q92743 480 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 NINJ1Q92982 152 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 MCHR2Q969V1 340 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 RSRC1Q96IZ7 334 aaKnown RBP13.28□□□□□ -0.28
LIG1-219ENST00000600055 FOXB1Q99853 325 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 VNN3Q9NY84 501 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.28□□□□□ -0.28
LIG1-219ENST00000600055 IL20RAQ9UHF4 553 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 AURKCQ9UQB9 309 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 SIGLEC7Q9Y286 467 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 LYVE1Q9Y5Y7 322 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 ALPK2Q86TB3 2170 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 ABCA4P78363 2273 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 NAV2Q8IVL1 2488 aa13.28□□□□□ -0.28
LIG1-219ENST00000600055 MAST4O15021 2626 aa13.27□□□□□ -0.28
LIG1-219ENST00000600055 AKAP9Q99996 3911 aa13.27□□□□□ -0.28
LIG1-219ENST00000600055 IGKV1D-43A0A0B4J1Z2 117 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 UNC119BA6NIH7 251 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 NPIPB13A6NJU9 1138 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 NPIPB4C9JG80 1138 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 TNFRSF11BO00300 401 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 HS3ST1O14792 307 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 DHHO43323 396 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 OR10H3O60404 316 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 IGHMP01871 453 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 HOXB1P14653 301 aaPredicted RBP13.27□□□□□ -0.29
LIG1-219ENST00000600055 PTAFRP25105 342 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 RPL4P36578 427 aaKnown RBP13.27□□□□□ -0.29
LIG1-219ENST00000600055 ACVR1BP36896 505 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 CAPZA2P47755 286 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 FXYD6P3P58550 94 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 HIST3H3Q16695 136 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 ANKDD1AQ495B1 522 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 THSD4Q6ZMP0 1018 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 CLDN22Q8N7P3 220 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 OR4C15Q8NGM1 316 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 ZNF519Q8TB69 540 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 CANT1Q8WVQ1 401 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 KATNB1Q9BVA0 655 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 TRIM15Q9C019 465 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 SEC61A2Q9H9S3 476 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 OBP2BQ9NPH6 170 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 TMCC3Q9ULS5 477 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 POMPQ9Y244 141 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 ADAM18Q9Y3Q7 739 aa13.27□□□□□ -0.29
LIG1-219ENST00000600055 MAGED1Q9Y5V3 778 aaPredicted RBP13.27□□□□□ -0.29
LIG1-219ENST00000600055 IGHV1-18A0A0C4DH31 117 aa13.26□□□□□ -0.29
LIG1-219ENST00000600055 AQP12BA6NM10 295 aa13.26□□□□□ -0.29
LIG1-219ENST00000600055 SLC2A10O95528 541 aa13.26□□□□□ -0.29
LIG1-219ENST00000600055 HLA-HP01893 362 aa13.26□□□□□ -0.29
LIG1-219ENST00000600055 CD14P08571 375 aa13.26□□□□□ -0.29
LIG1-219ENST00000600055 CELA3BP08861 270 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms