RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 A0A0G2JMP0 313 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 A0A0X1KG70 313 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 H3BSH0 61 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 OR2T1O43869 369 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 MPZL1O95297 269 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 LDOC1O95751 146 aaPredicted RBP13.01□□□□□ -0.33
VRK3-217ENST00000599538 APOA1P02647 267 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 SP9P0CG40 484 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 COX6A1P12074 109 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 ATF1P18846 271 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 CFL1P23528 166 aaKnown RBP13.01□□□□□ -0.33
VRK3-217ENST00000599538 HTR3AP46098 478 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 CENPAP49450 140 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 NTRK2Q16620 822 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 PLPPR5Q32ZL2 321 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 UNQ9370/PRO34162Q6UXP9 181 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 ZNF517Q6ZMY9 492 aaPredicted RBP13.01□□□□□ -0.33
VRK3-217ENST00000599538 SLC35D2Q76EJ3 337 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 Q8N402 240 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 SAMD12Q8N8I0 201 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 ZBTB44Q8NCP5 570 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 IL17RDQ8NFM7 739 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 OR4M2Q8NGB6 313 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 HPS1Q92902 700 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 SPACA9Q96E40 222 aaPredicted RBP13.01□□□□□ -0.33
VRK3-217ENST00000599538 IMMP1LQ96LU5 166 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 INTS14Q96SY0 518 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 GFI1Q99684 422 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 TMEM185BQ9H7F4 350 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 SLC39A1Q9NY26 324 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 EXTL2Q9UBQ6 330 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 IKZF2Q9UKS7 526 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 IGLV1-36A0A0B4J1U3 117 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 SLC22A23A1A5C7 686 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 ANKRD61A6NGH8 418 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 SNPHO15079 494 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 SEC14L5O43304 696 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 WNT11O96014 354 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 HLA-DQA2P01906 255 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 TFPIP10646 304 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 APOBEC1P41238 236 aaKnown RBP13.01□□□□□ -0.33
VRK3-217ENST00000599538 SUMO3P55854 103 aaPredicted RBP13.01□□□□□ -0.33
VRK3-217ENST00000599538 SCN1BQ07699 218 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 PUDPQ08623 228 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 CLPPQ16740 277 aaPredicted RBP13.01□□□□□ -0.33
VRK3-217ENST00000599538 OR4M1Q8NGD0 313 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 SETD6Q8TBK2 473 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 RHBDD1Q8TEB9 315 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 KIAA1143Q96AT1 154 aaPredicted RBP13.01□□□□□ -0.33
VRK3-217ENST00000599538 NXPE2Q96DL1 559 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 TXNDC15Q96J42 360 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 NDEL1Q9GZM8 345 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 SLC25A18Q9H1K4 315 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 MED29Q9NX70 200 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 ANKRD10Q9NXR5 420 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 SLCO1C1Q9NYB5 712 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 CLEC4AQ9UMR7 237 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 PCDHGB2Q9Y5G2 931 aa13.01□□□□□ -0.33
VRK3-217ENST00000599538 TRAV1-2A0A0B4J238 106 aa13□□□□□ -0.33
VRK3-217ENST00000599538 ZNF593O00488 134 aaPredicted RBP13□□□□□ -0.33
VRK3-217ENST00000599538 SERPINA3P01011 423 aa13□□□□□ -0.33
VRK3-217ENST00000599538 CD1AP06126 327 aa13□□□□□ -0.33
VRK3-217ENST00000599538 SNRPBP14678 240 aaKnown RBP13□□□□□ -0.33
VRK3-217ENST00000599538 CD97P48960 835 aa13□□□□□ -0.33
VRK3-217ENST00000599538 TMED10P49755 219 aaKnown RBP13□□□□□ -0.33
VRK3-217ENST00000599538 FMODQ06828 376 aa13□□□□□ -0.33
VRK3-217ENST00000599538 ODF4Q2M2E3 257 aa13□□□□□ -0.33
VRK3-217ENST00000599538 RDH10Q8IZV5 341 aa13□□□□□ -0.33
VRK3-217ENST00000599538 WDSUB1Q8N9V3 476 aa13□□□□□ -0.33
VRK3-217ENST00000599538 OR10AC1Q8NH08 325 aa13□□□□□ -0.33
VRK3-217ENST00000599538 TRMT10AQ8TBZ6 339 aaKnown RBP13□□□□□ -0.33
VRK3-217ENST00000599538 SLC22A8Q8TCC7 542 aa13□□□□□ -0.33
VRK3-217ENST00000599538 ACOT12Q8WYK0 555 aa13□□□□□ -0.33
VRK3-217ENST00000599538 KLHL15Q96M94 604 aa13□□□□□ -0.33
VRK3-217ENST00000599538 TTYH2Q9BSA4 534 aa13□□□□□ -0.33
VRK3-217ENST00000599538 MMP28Q9H239 520 aa13□□□□□ -0.33
VRK3-217ENST00000599538 CYSLTR2Q9NS75 346 aa13□□□□□ -0.33
VRK3-217ENST00000599538 VSX1Q9NZR4 365 aaPredicted RBP13□□□□□ -0.33
VRK3-217ENST00000599538 NXT1Q9UKK6 140 aaKnown RBP13□□□□□ -0.33
VRK3-217ENST00000599538 ZNF281Q9Y2X9 895 aa13□□□□□ -0.33
VRK3-217ENST00000599538 FKBP7Q9Y680 259 aa13□□□□□ -0.33
VRK3-217ENST00000599538 CHCHD2Q9Y6H1 151 aaPredicted RBP13□□□□□ -0.33
VRK3-217ENST00000599538 IGKV1D-43A0A0B4J1Z2 117 aa13□□□□□ -0.33
VRK3-217ENST00000599538 LNP1A1A4G5 178 aa13□□□□□ -0.33
VRK3-217ENST00000599538 IGHMP01871 453 aa13□□□□□ -0.33
VRK3-217ENST00000599538 EPXP11678 715 aa13□□□□□ -0.33
VRK3-217ENST00000599538 IFNGR1P15260 489 aa13□□□□□ -0.33
VRK3-217ENST00000599538 ACP1P24666 158 aa13□□□□□ -0.33
VRK3-217ENST00000599538 DLX5P56178 289 aa13□□□□□ -0.33
VRK3-217ENST00000599538 RPS18P62269 152 aaKnown RBP13□□□□□ -0.33
VRK3-217ENST00000599538 ASAH1Q13510 395 aa13□□□□□ -0.33
VRK3-217ENST00000599538 LRRN1Q6UXK5 716 aa13□□□□□ -0.33
VRK3-217ENST00000599538 OR2M3Q8NG83 312 aa13□□□□□ -0.33
VRK3-217ENST00000599538 MFSD8Q8NHS3 518 aa13□□□□□ -0.33
VRK3-217ENST00000599538 OTOSQ8NHW6 89 aa13□□□□□ -0.33
VRK3-217ENST00000599538 ZNF879B4DU55 563 aa12.99□□□□□ -0.33
VRK3-217ENST00000599538 ETV2O00321 342 aaPredicted RBP12.99□□□□□ -0.33
VRK3-217ENST00000599538 GPRIN2O60269 458 aa12.99□□□□□ -0.33
VRK3-217ENST00000599538 SLC19A2O60779 497 aa12.99□□□□□ -0.33
VRK3-217ENST00000599538 GATBO75879 557 aaKnown RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms