RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 IGHMP01871 453 aa12.72□□□□□ -0.37
VRK3-206ENST00000594090 HOXB1P14653 301 aaPredicted RBP12.72□□□□□ -0.37
VRK3-206ENST00000594090 PTAFRP25105 342 aa12.72□□□□□ -0.37
VRK3-206ENST00000594090 CD40P25942 277 aa12.72□□□□□ -0.37
VRK3-206ENST00000594090 RRM2P31350 389 aa12.72□□□□□ -0.37
VRK3-206ENST00000594090 MAGEA2P43356 314 aa12.72□□□□□ -0.37
VRK3-206ENST00000594090 LIMS1P48059 325 aa12.72□□□□□ -0.37
VRK3-206ENST00000594090 CLRN1P58418 232 aa12.72□□□□□ -0.37
VRK3-206ENST00000594090 RUNX1T1Q06455 604 aa12.72□□□□□ -0.37
VRK3-206ENST00000594090 SPOCK1Q08629 439 aa12.72□□□□□ -0.37
VRK3-206ENST00000594090 ARMC4Q5T2S8 1044 aa12.72□□□□□ -0.37
VRK3-206ENST00000594090 C20orf204Q6ZNR8 217 aa12.72□□□□□ -0.37
VRK3-206ENST00000594090 IGFN1Q86VF2 1251 aa12.72□□□□□ -0.37
VRK3-206ENST00000594090 LRRC75AQ8NAA5 344 aa12.72□□□□□ -0.37
VRK3-206ENST00000594090 NEUROG1Q92886 237 aa12.72□□□□□ -0.37
VRK3-206ENST00000594090 MBD6Q96DN6 1003 aa12.72□□□□□ -0.37
VRK3-206ENST00000594090 LRGUKQ96M69 825 aa12.72□□□□□ -0.37
VRK3-206ENST00000594090 TNFRSF13CQ96RJ3 184 aa12.72□□□□□ -0.37
VRK3-206ENST00000594090 BTBD10Q9BSF8 475 aa12.72□□□□□ -0.37
VRK3-206ENST00000594090 TXNIPQ9H3M7 391 aa12.72□□□□□ -0.37
VRK3-206ENST00000594090 KRCC1Q9NPI7 259 aaPredicted RBP12.72□□□□□ -0.37
VRK3-206ENST00000594090 STX18Q9P2W9 335 aaKnown RBP12.72□□□□□ -0.37
VRK3-206ENST00000594090 CENPBD1B2RD01 187 aa12.71□□□□□ -0.37
VRK3-206ENST00000594090 SHISA9B4DS77 424 aa12.71□□□□□ -0.37
VRK3-206ENST00000594090 TRMUO75648 421 aaKnown RBP12.71□□□□□ -0.37
VRK3-206ENST00000594090 STAMBPO95630 424 aa12.71□□□□□ -0.37
VRK3-206ENST00000594090 ACADSP16219 412 aa12.71□□□□□ -0.37
VRK3-206ENST00000594090 PAX7P23759 505 aa12.71□□□□□ -0.37
VRK3-206ENST00000594090 ART1P52961 327 aa12.71□□□□□ -0.37
VRK3-206ENST00000594090 CTXN1P60606 82 aa12.71□□□□□ -0.37
VRK3-206ENST00000594090 TUBA1BP68363 451 aa12.71□□□□□ -0.37
VRK3-206ENST00000594090 TUBA4AP68366 448 aa12.71□□□□□ -0.37
VRK3-206ENST00000594090 TRAP1Q12931 704 aaKnown RBP12.71□□□□□ -0.37
VRK3-206ENST00000594090 TOP3AQ13472 1001 aaPredicted RBP12.71□□□□□ -0.37
VRK3-206ENST00000594090 TAF11Q15544 211 aa12.71□□□□□ -0.37
VRK3-206ENST00000594090 ZNF672Q499Z4 452 aaPredicted RBP12.71□□□□□ -0.37
VRK3-206ENST00000594090 PGM2L1Q6PCE3 622 aa12.71□□□□□ -0.37
VRK3-206ENST00000594090 TUBA1AQ71U36 451 aa12.71□□□□□ -0.37
VRK3-206ENST00000594090 ZNF627Q7L945 461 aa12.71□□□□□ -0.37
VRK3-206ENST00000594090 PIAS4Q8N2W9 510 aaPredicted RBP12.71□□□□□ -0.37
VRK3-206ENST00000594090 POP5Q969H6 163 aaKnown RBP12.71□□□□□ -0.37
VRK3-206ENST00000594090 FOXB1Q99853 325 aa12.71□□□□□ -0.37
VRK3-206ENST00000594090 MRPL13Q9BYD1 178 aaKnown RBP12.71□□□□□ -0.37
VRK3-206ENST00000594090 TRIM15Q9C019 465 aa12.71□□□□□ -0.37
VRK3-206ENST00000594090 MGAT4BQ9UQ53 548 aa12.71□□□□□ -0.37
VRK3-206ENST00000594090 POFUT2Q9Y2G5 429 aa12.71□□□□□ -0.37
VRK3-206ENST00000594090 ANKRD17O75179 2603 aaKnown RBP12.71□□□□□ -0.37
VRK3-206ENST00000594090 POLQO75417 2590 aa12.71□□□□□ -0.37
VRK3-206ENST00000594090 ZNF503-AS2A6NEH8 195 aa12.71□□□□□ -0.38
VRK3-206ENST00000594090 DNAJC8O75937 253 aaPredicted RBP12.71□□□□□ -0.38
VRK3-206ENST00000594090 QDPRP09417 244 aa12.71□□□□□ -0.38
VRK3-206ENST00000594090 ZNF26P17031 533 aaPredicted RBP12.71□□□□□ -0.38
VRK3-206ENST00000594090 CDH11P55287 796 aa12.71□□□□□ -0.38
VRK3-206ENST00000594090 RPL27P61353 136 aaKnown RBP12.71□□□□□ -0.38
VRK3-206ENST00000594090 CHRNB3Q05901 458 aa12.71□□□□□ -0.38
VRK3-206ENST00000594090 TESK1Q15569 626 aa12.71□□□□□ -0.38
VRK3-206ENST00000594090 HIST3H3Q16695 136 aa12.71□□□□□ -0.38
VRK3-206ENST00000594090 DEFB113Q30KQ7 82 aa12.71□□□□□ -0.38
VRK3-206ENST00000594090 ZBED5Q49AG3 693 aa12.71□□□□□ -0.38
VRK3-206ENST00000594090 FAM98BQ52LJ0 330 aaKnown RBP12.71□□□□□ -0.38
VRK3-206ENST00000594090 LRFN4Q6PJG9 635 aa12.71□□□□□ -0.38
VRK3-206ENST00000594090 ZNF813Q6ZN06 617 aa12.71□□□□□ -0.38
VRK3-206ENST00000594090 ZNF611Q8N823 705 aa12.71□□□□□ -0.38
VRK3-206ENST00000594090 SYT14Q8NB59 555 aa12.71□□□□□ -0.38
VRK3-206ENST00000594090 HDAC2Q92769 488 aaKnown RBP12.71□□□□□ -0.38
VRK3-206ENST00000594090 FBXW5Q969U6 566 aa12.71□□□□□ -0.38
VRK3-206ENST00000594090 MCHR2Q969V1 340 aa12.71□□□□□ -0.38
VRK3-206ENST00000594090 RSRC1Q96IZ7 334 aaKnown RBP12.71□□□□□ -0.38
VRK3-206ENST00000594090 RADILQ96JH8 1075 aa12.71□□□□□ -0.38
VRK3-206ENST00000594090 ALPK1Q96QP1 1244 aa12.71□□□□□ -0.38
VRK3-206ENST00000594090 TSPAN32Q96QS1 320 aa12.71□□□□□ -0.38
VRK3-206ENST00000594090 CCL19Q99731 98 aa12.71□□□□□ -0.38
VRK3-206ENST00000594090 KATNB1Q9BVA0 655 aa12.71□□□□□ -0.38
VRK3-206ENST00000594090 CRNNQ9UBG3 495 aaPredicted RBP12.71□□□□□ -0.38
VRK3-206ENST00000594090 ZNF346Q9UL40 294 aaKnown RBP12.71□□□□□ -0.38
VRK3-206ENST00000594090 AURKCQ9UQB9 309 aa12.71□□□□□ -0.38
VRK3-206ENST00000594090 SIGLEC7Q9Y286 467 aa12.71□□□□□ -0.38
VRK3-206ENST00000594090 IGHV1-18A0A0C4DH31 117 aa12.7□□□□□ -0.38
VRK3-206ENST00000594090 DHHO43323 396 aa12.7□□□□□ -0.38
VRK3-206ENST00000594090 B4GALT1P15291 398 aa12.7□□□□□ -0.38
VRK3-206ENST00000594090 RPL4P36578 427 aaKnown RBP12.7□□□□□ -0.38
VRK3-206ENST00000594090 MYBPC1Q00872 1141 aa12.7□□□□□ -0.38
VRK3-206ENST00000594090 C3orf36Q3SXR2 165 aa12.7□□□□□ -0.38
VRK3-206ENST00000594090 FAM205BPQ63HN1 556 aa12.7□□□□□ -0.38
VRK3-206ENST00000594090 SLC22A25Q6T423 547 aa12.7□□□□□ -0.38
VRK3-206ENST00000594090 CCDC36Q8IYA8 594 aa12.7□□□□□ -0.38
VRK3-206ENST00000594090 FAM169BQ8N8A8 192 aa12.7□□□□□ -0.38
VRK3-206ENST00000594090 ZNF519Q8TB69 540 aa12.7□□□□□ -0.38
VRK3-206ENST00000594090 PIGTQ969N2 578 aa12.7□□□□□ -0.38
VRK3-206ENST00000594090 SLC38A2Q96QD8 506 aa12.7□□□□□ -0.38
VRK3-206ENST00000594090 KCNK17Q96T54 332 aa12.7□□□□□ -0.38
VRK3-206ENST00000594090 GPA33Q99795 319 aa12.7□□□□□ -0.38
VRK3-206ENST00000594090 FOXC2Q99958 501 aa12.7□□□□□ -0.38
VRK3-206ENST00000594090 NDEL1Q9GZM8 345 aa12.7□□□□□ -0.38
VRK3-206ENST00000594090 CXXC4Q9H2H0 198 aa12.7□□□□□ -0.38
VRK3-206ENST00000594090 MOV10Q9HCE1 1003 aaKnown RBP12.7□□□□□ -0.38
VRK3-206ENST00000594090 TMCC3Q9ULS5 477 aa12.7□□□□□ -0.38
VRK3-206ENST00000594090 LYVE1Q9Y5Y7 322 aa12.7□□□□□ -0.38
VRK3-206ENST00000594090 AKAP9Q99996 3911 aa12.69□□□□□ -0.38
VRK3-206ENST00000594090 ALPK2Q86TB3 2170 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms