RNA–Protein interactions for RNA: ENST00000585241.5

SS18-226, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 774 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-226ENST00000585241 PGA4P0DJD7 388 aa14.33□□□□□ -0.12
SS18-226ENST00000585241 PGA3P0DJD8 388 aa14.33□□□□□ -0.12
SS18-226ENST00000585241 ACVR2AP27037 513 aa14.33□□□□□ -0.12
SS18-226ENST00000585241 ZNF133P52736 654 aaPredicted RBP14.33□□□□□ -0.12
SS18-226ENST00000585241 CSNK2BP67870 215 aa14.33□□□□□ -0.12
SS18-226ENST00000585241 HIST3H3Q16695 136 aa14.33□□□□□ -0.12
SS18-226ENST00000585241 RTL6Q6ICC9 239 aa14.33□□□□□ -0.12
SS18-226ENST00000585241 NIPAL3Q6P499 406 aa14.33□□□□□ -0.12
SS18-226ENST00000585241 PLBD1Q6P4A8 553 aa14.33□□□□□ -0.12
SS18-226ENST00000585241 PLXDC2Q6UX71 529 aa14.33□□□□□ -0.12
SS18-226ENST00000585241 CD163Q86VB7 1156 aa14.33□□□□□ -0.12
SS18-226ENST00000585241 GID4Q8IVV7 300 aa14.33□□□□□ -0.12
SS18-226ENST00000585241 CYB561A3Q8NBI2 242 aa14.33□□□□□ -0.12
SS18-226ENST00000585241 NOXO1Q8NFA2 376 aa14.33□□□□□ -0.12
SS18-226ENST00000585241 MBD3L2Q8NHZ7 208 aaPredicted RBP14.33□□□□□ -0.12
SS18-226ENST00000585241 FNDC8Q8TC99 324 aa14.33□□□□□ -0.12
SS18-226ENST00000585241 OR2M2Q96R28 347 aa14.33□□□□□ -0.12
SS18-226ENST00000585241 TRIB1Q96RU8 372 aa14.33□□□□□ -0.12
SS18-226ENST00000585241 EMC6Q9BV81 110 aa14.33□□□□□ -0.12
SS18-226ENST00000585241 HCAR1Q9BXC0 346 aa14.33□□□□□ -0.12
SS18-226ENST00000585241 TRIM64A6NGJ6 449 aa14.32□□□□□ -0.12
SS18-226ENST00000585241 SLC1A7O00341 560 aa14.32□□□□□ -0.12
SS18-226ENST00000585241 YES1P07947 543 aa14.32□□□□□ -0.12
SS18-226ENST00000585241 ABOP16442 354 aa14.32□□□□□ -0.12
SS18-226ENST00000585241 FMO3P31513 532 aa14.32□□□□□ -0.12
SS18-226ENST00000585241 NTF4P34130 210 aa14.32□□□□□ -0.12
SS18-226ENST00000585241 TMED1Q13445 227 aa14.32□□□□□ -0.12
SS18-226ENST00000585241 SMN1Q16637 294 aaKnown RBP14.32□□□□□ -0.12
SS18-226ENST00000585241 RBM48Q5RL73 367 aaKnown RBP14.32□□□□□ -0.12
SS18-226ENST00000585241 C1orf185Q5T7R7 199 aa14.32□□□□□ -0.12
SS18-226ENST00000585241 ZNF585AQ6P3V2 769 aa14.32□□□□□ -0.12
SS18-226ENST00000585241 BCDIN3DQ7Z5W3 292 aaKnown RBP14.32□□□□□ -0.12
SS18-226ENST00000585241 ZBTB46Q86UZ6 589 aa14.32□□□□□ -0.12
SS18-226ENST00000585241 ST6GALNAC3Q8NDV1 305 aa14.32□□□□□ -0.12
SS18-226ENST00000585241 BBS1Q8NFJ9 593 aa14.32□□□□□ -0.12
SS18-226ENST00000585241 CPT1CQ8TCG5 803 aa14.32□□□□□ -0.12
SS18-226ENST00000585241 TMEM54Q969K7 222 aa14.32□□□□□ -0.12
SS18-226ENST00000585241 INTS12Q96CB8 462 aaKnown RBP14.32□□□□□ -0.12
SS18-226ENST00000585241 GMPPAQ96IJ6 420 aaPredicted RBP14.32□□□□□ -0.12
SS18-226ENST00000585241 SYT4Q9H2B2 425 aa14.32□□□□□ -0.12
SS18-226ENST00000585241 DNAJC27Q9NZQ0 273 aa14.32□□□□□ -0.12
SS18-226ENST00000585241 FOXD3Q9UJU5 478 aaPredicted RBP14.32□□□□□ -0.12
SS18-226ENST00000585241 FAM215AQ9Y5M1 114 aa14.32□□□□□ -0.12
SS18-226ENST00000585241 FKBP7Q9Y680 259 aa14.32□□□□□ -0.12
SS18-226ENST00000585241 EPG5Q9HCE0 2579 aa14.32□□□□□ -0.12
SS18-226ENST00000585241 CCDC182A6NF36 153 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 SNTNA6NMZ2 147 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 ZNF726A6NNF4 738 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 H7C1C5 153 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 PRRG2O14669 202 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 SLC19A2O60779 497 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 NR2C1P13056 603 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 SPI1P17947 270 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 CRHBPP24387 322 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 AGTR1P30556 359 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 HTR1FP30939 366 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 SLC15A1P46059 708 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 SELENOPP49908 381 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 CHN2P52757 468 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 LCN6P62502 163 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 RBPJQ06330 500 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 NFATC3Q12968 1075 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 SLC35D3Q5M8T2 416 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 OR2A2Q6IF42 318 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 SEM1Q6ZVN7 128 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 P4HA3Q7Z4N8 544 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 ZGRF1Q86YA3 2104 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 MCEMP1Q8IX19 187 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 TUSC5Q8IXB3 177 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 C20orf196Q8IYI0 205 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 ZNF786Q8N393 782 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 C9orf106Q8NAJ2 232 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 OR2T4Q8NH00 348 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 KISS1RQ969F8 398 aaPredicted RBP14.31□□□□□ -0.12
SS18-226ENST00000585241 RFKQ969G6 155 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 TM9SF2Q99805 663 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 RACGAP1Q9H0H5 632 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 TP63Q9H3D4 680 aaPredicted RBP14.31□□□□□ -0.12
SS18-226ENST00000585241 MED20Q9H944 212 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 RPRD1BQ9NQG5 326 aaKnown RBP14.31□□□□□ -0.12
SS18-226ENST00000585241 MRPS18AQ9NVS2 196 aaKnown RBP14.31□□□□□ -0.12
SS18-226ENST00000585241 FKBP14Q9NWM8 211 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 HAO2Q9NYQ3 351 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP14.31□□□□□ -0.12
SS18-226ENST00000585241 MOKQ9UQ07 419 aa14.31□□□□□ -0.12
SS18-226ENST00000585241 PRRC2CQ9Y520 2896 aaKnown RBP14.31□□□□□ -0.12
SS18-226ENST00000585241 MED12LQ86YW9 2145 aa14.3□□□□□ -0.12
SS18-226ENST00000585241 DOCK7Q96N67 2140 aa14.3□□□□□ -0.12
SS18-226ENST00000585241 IGLV1-36A0A0B4J1U3 117 aa14.3□□□□□ -0.12
SS18-226ENST00000585241 SLC22A31A6NKX4 558 aa14.3□□□□□ -0.12
SS18-226ENST00000585241 CLUP10909 449 aa14.3□□□□□ -0.12
SS18-226ENST00000585241 DBTP11182 482 aaKnown RBP14.3□□□□□ -0.12
SS18-226ENST00000585241 PIPP12273 146 aaPredicted RBP14.3□□□□□ -0.12
SS18-226ENST00000585241 CRABP1P29762 137 aa14.3□□□□□ -0.12
SS18-226ENST00000585241 CDH11P55287 796 aa14.3□□□□□ -0.12
SS18-226ENST00000585241 ZNF91Q05481 1191 aa14.3□□□□□ -0.12
SS18-226ENST00000585241 CAMK2DQ13557 499 aa14.3□□□□□ -0.12
SS18-226ENST00000585241 EIF2S3LQ2VIR3 472 aaKnown RBP14.3□□□□□ -0.12
SS18-226ENST00000585241 KCTD21Q4G0X4 260 aa14.3□□□□□ -0.12
SS18-226ENST00000585241 THEM4Q5T1C6 240 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms