RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 ISG20L2Q9H9L3 353 aaKnown RBP9.42□□□□□ -0.9
SS18-217ENST00000580958 ISYNA1Q9NPH2 558 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 VSX1Q9NZR4 365 aaPredicted RBP9.42□□□□□ -0.9
SS18-217ENST00000580958 B3GAT1Q9P2W7 334 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 MOKQ9UQ07 419 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 TRAPPC4Q9Y296 219 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 CAB39Q9Y376 341 aaPredicted RBP9.42□□□□□ -0.9
SS18-217ENST00000580958 MRPS18CQ9Y3D5 142 aaKnown RBP9.42□□□□□ -0.9
SS18-217ENST00000580958 AKAP13Q12802 2813 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 LOC100506127A0A0U1RQW1 187 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 PNMA8CA0A1B0GUJ8 204 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 A0A1W2PQL4 384 aaPredicted RBP9.41□□□□□ -0.9
SS18-217ENST00000580958 SLC22A23A1A5C7 686 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 TVP23AA6NH52 213 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 NPIPB13A6NJU9 1138 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 AQP7P3A6NL99 342 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 FAM166BA8MTA8 275 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 NPIPB4C9JG80 1138 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 CDK2AP1O14519 115 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 TNFSF11O14788 317 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 SLC22A1O15245 554 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 NME2P1O60361 137 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 RAMP1O60894 148 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 GPANK1O95872 356 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 SP1P08047 785 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 CD46P15529 392 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 CPEP16870 476 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 NME2P22392 152 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 PAX7P23759 505 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 TGFBR1P36897 503 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 MEOX1P50221 254 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 DAP3P51398 398 aaKnown RBP9.41□□□□□ -0.9
SS18-217ENST00000580958 RPS3AP61247 264 aaKnown RBP9.41□□□□□ -0.9
SS18-217ENST00000580958 PLGLB1Q02325 96 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 LSAMPQ13449 338 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 TPBGQ13641 420 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 GALEQ14376 348 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 LIPKQ5VXJ0 399 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 C19orf48Q6RUI8 117 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 NHLRC1Q6VVB1 395 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 SSX6Q7RTT6 188 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 GALNTL5Q7Z4T8 443 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 KLBQ86Z14 1044 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 OR6V1Q8N148 313 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 NDNFQ8TB73 568 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 KCNE4Q8WWG9 221 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 UFD1Q92890 307 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 DTNBP1Q96EV8 351 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 KLHL15Q96M94 604 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 OXGR1Q96P68 337 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 TIMP4Q99727 224 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 CHCHD6Q9BRQ6 235 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 TTTY10Q9BZA0 68 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 NUAK2Q9H093 628 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 RNF32Q9H0A6 362 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.41□□□□□ -0.9
SS18-217ENST00000580958 FANCFQ9NPI8 374 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 NDUFB11Q9NX14 153 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 MED29Q9NX70 200 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 B4GALT7Q9UBV7 327 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 COPS3Q9UNS2 423 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 B9D1Q9UPM9 204 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 KLF13Q9Y2Y9 288 aaPredicted RBP9.41□□□□□ -0.9
SS18-217ENST00000580958 NOX1Q9Y5S8 564 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 FKBP7Q9Y680 259 aa9.41□□□□□ -0.9
SS18-217ENST00000580958 IGLV1-36A0A0B4J1U3 117 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 IGHV3-15A0A0B4J1V0 119 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 GJE1A6NN92 205 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 J3QLW9 94 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 DLL1O00548 723 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 SEC14L5O43304 696 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 TRAF3IP2O43734 574 aaPredicted RBP9.4□□□□□ -0.9
SS18-217ENST00000580958 AKAP8O43823 692 aaKnown RBP9.4□□□□□ -0.9
SS18-217ENST00000580958 SLC16A7O60669 478 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 GPX5O75715 221 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 OR2T7P0C7T2 308 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 CTLA4P16410 223 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 ZNF19P17023 458 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 ZNF182P17025 639 aaPredicted RBP9.4□□□□□ -0.9
SS18-217ENST00000580958 SPINK2P20155 84 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 CENPAP49450 140 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 STARP49675 285 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 BIDP55957 195 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 CLDN20P56880 219 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 RPS25P62851 125 aaKnown RBP9.4□□□□□ -0.9
SS18-217ENST00000580958 CSNK2A1P68400 391 aaPredicted RBP9.4□□□□□ -0.9
SS18-217ENST00000580958 ARG2P78540 354 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 CRTC2Q53ET0 693 aaPredicted RBP9.4□□□□□ -0.9
SS18-217ENST00000580958 SOWAHCQ53LP3 525 aaPredicted RBP9.4□□□□□ -0.9
SS18-217ENST00000580958 ZNF766Q5HY98 468 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 FAM205BPQ63HN1 556 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 SLC16A9Q7RTY1 509 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 GPAT4Q86UL3 456 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 GGNQ86UU5 652 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 ZBTB46Q86UZ6 589 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 PHC2Q8IXK0 858 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 SYT14Q8NB59 555 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 OR2T27Q8NH04 317 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 FOXN4Q96NZ1 517 aa9.4□□□□□ -0.9
SS18-217ENST00000580958 NAA11Q9BSU3 229 aaPredicted RBP9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms