RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 TUBA4AP68366 448 aa12.52□□□□□ -0.41
SMARCE1-216ENST00000580419 FXNQ16595 210 aa12.52□□□□□ -0.41
SMARCE1-216ENST00000580419 FAM166AQ6J272 317 aa12.52□□□□□ -0.41
SMARCE1-216ENST00000580419 NANOGP8Q6NSW7 305 aa12.52□□□□□ -0.41
SMARCE1-216ENST00000580419 TUBA1AQ71U36 451 aa12.52□□□□□ -0.41
SMARCE1-216ENST00000580419 SLC35D2Q76EJ3 337 aa12.52□□□□□ -0.41
SMARCE1-216ENST00000580419 ZNF566Q969W8 418 aa12.52□□□□□ -0.41
SMARCE1-216ENST00000580419 MRPL24Q96A35 216 aaKnown RBP12.52□□□□□ -0.41
SMARCE1-216ENST00000580419 TAMM41Q96BW9 452 aa12.52□□□□□ -0.41
SMARCE1-216ENST00000580419 TXNDC15Q96J42 360 aa12.52□□□□□ -0.41
SMARCE1-216ENST00000580419 FOXN4Q96NZ1 517 aa12.52□□□□□ -0.41
SMARCE1-216ENST00000580419 VRK1Q99986 396 aaPredicted RBP12.52□□□□□ -0.41
SMARCE1-216ENST00000580419 NANOGQ9H9S0 305 aa12.52□□□□□ -0.41
SMARCE1-216ENST00000580419 MED29Q9NX70 200 aa12.52□□□□□ -0.41
SMARCE1-216ENST00000580419 ZNF224Q9NZL3 707 aa12.52□□□□□ -0.41
SMARCE1-216ENST00000580419 AP3M1Q9Y2T2 418 aa12.52□□□□□ -0.41
SMARCE1-216ENST00000580419 M0R3H8 397 aa12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 STAMBPO95630 424 aa12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 SNAP29O95721 258 aa12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 PTHP01270 115 aa12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 MT-ND1P03886 318 aa12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 THY1P04216 161 aa12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 CELA3BP08861 270 aa12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 IFNGR1P15260 489 aa12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 CRYBA2P53672 197 aa12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 RAB1AP62820 205 aa12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 IL1RL1Q01638 556 aa12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 RIN1Q13671 783 aa12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 MAPRE2Q15555 327 aa12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 WDR88Q6ZMY6 472 aa12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 MYPOPQ86VE0 399 aaPredicted RBP12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 OR10A6Q8NH74 314 aa12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 LRRC58Q96CX6 371 aa12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 PRSS27Q9BQR3 290 aa12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 EMC6Q9BV81 110 aa12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 BEX2Q9BXY8 128 aa12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 MRPL13Q9BYD1 178 aaKnown RBP12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 SEC61A2Q9H9S3 476 aa12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 SMURF2Q9HAU4 748 aa12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 NPHS2Q9NP85 383 aa12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 SLC7A8Q9UHI5 535 aa12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 KCNS2Q9ULS6 477 aa12.51□□□□□ -0.41
SMARCE1-216ENST00000580419 GMNCA6NCL1 334 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 FXYD1O00168 92 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 FBP2O00757 339 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 OR5F1O95221 314 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 FARS2O95363 451 aaKnown RBP12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 RAB36O95755 333 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 HLA-HP01893 362 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 HIST1H2ABP04908 130 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 IGFBP1P08833 259 aaPredicted RBP12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 PGA4P0DJD7 388 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 PGA3P0DJD8 388 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 NR2C1P13056 603 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 APEHP13798 732 aaKnown RBP12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 DAOP14920 347 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 AHCYP23526 432 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 LSP1P33241 339 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 CHN2P52757 468 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 BIDP55957 195 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 NPRL3Q12980 569 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 SNTB2Q13425 540 aaKnown RBP12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 CAMK2DQ13557 499 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 SELPLGQ14242 412 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 TAF11Q15544 211 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 ANKDD1AQ495B1 522 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 LRFN4Q6PJG9 635 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 HIST3H2AQ7L7L0 130 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 C1orf174Q8IYL3 243 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 SLC22A24Q8N4F4 322 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 C10orf53Q8N6V4 93 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 OR4D11Q8NGI4 311 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 RNF217Q8TC41 542 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 FNDC8Q8TC99 324 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 SLC26A7Q8TE54 656 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 UBASH3BQ8TF42 649 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 HTRA1Q92743 480 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 HIST1H2ACQ93077 130 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 MSI2Q96DH6 328 aaKnown RBP12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 SHARPINQ9H0F6 387 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 TMEM38BQ9NVV0 291 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 SLC7A7Q9UM01 511 aa12.5□□□□□ -0.41
SMARCE1-216ENST00000580419 IGHV4-61A0A0C4DH41 118 aa12.49□□□□□ -0.41
SMARCE1-216ENST00000580419 A0A0G2JND7 137 aa12.49□□□□□ -0.41
SMARCE1-216ENST00000580419 CPSF4LA6NMK7 179 aaKnown RBP12.49□□□□□ -0.41
SMARCE1-216ENST00000580419 LRRN3E7EW58 273 aa12.49□□□□□ -0.41
SMARCE1-216ENST00000580419 M0R233 179 aa12.49□□□□□ -0.41
SMARCE1-216ENST00000580419 DHHO43323 396 aa12.49□□□□□ -0.41
SMARCE1-216ENST00000580419 LY6HO94772 140 aa12.49□□□□□ -0.41
SMARCE1-216ENST00000580419 CH25HO95992 272 aa12.49□□□□□ -0.41
SMARCE1-216ENST00000580419 IGHG1P01857 330 aa12.49□□□□□ -0.41
SMARCE1-216ENST00000580419 TROVE2P10155 538 aaKnown RBP eCLIP12.49□□□□□ -0.41
SMARCE1-216ENST00000580419 B4GALT1P15291 398 aa12.49□□□□□ -0.41
SMARCE1-216ENST00000580419 HNF1AP20823 631 aa12.49□□□□□ -0.41
SMARCE1-216ENST00000580419 CBLP22681 906 aa12.49□□□□□ -0.41
SMARCE1-216ENST00000580419 CAPZA2P47755 286 aa12.49□□□□□ -0.41
SMARCE1-216ENST00000580419 C10orf128Q5T292 105 aa12.49□□□□□ -0.41
SMARCE1-216ENST00000580419 SPATA21Q7Z572 469 aa12.49□□□□□ -0.41
SMARCE1-216ENST00000580419 PCYOX1LQ8NBM8 494 aa12.49□□□□□ -0.41
SMARCE1-216ENST00000580419 ECSITQ9BQ95 431 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms