RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 ZNF570Q96NI8 536 aa7.56□□□□□ -1.2
NUP88-211ENST00000575976 ERMAPQ96PL5 475 aaPredicted RBP7.56□□□□□ -1.2
NUP88-211ENST00000575976 IFT27Q9BW83 186 aa7.56□□□□□ -1.2
NUP88-211ENST00000575976 TSSK6Q9BXA6 273 aa7.56□□□□□ -1.2
NUP88-211ENST00000575976 OSBPL10Q9BXB5 764 aa7.56□□□□□ -1.2
NUP88-211ENST00000575976 LINC00470Q9BZP3 86 aa7.56□□□□□ -1.2
NUP88-211ENST00000575976 NDEL1Q9GZM8 345 aa7.56□□□□□ -1.2
NUP88-211ENST00000575976 SLCO5A1Q9H2Y9 848 aa7.56□□□□□ -1.2
NUP88-211ENST00000575976 DCLRE1BQ9H816 532 aa7.56□□□□□ -1.2
NUP88-211ENST00000575976 PAPOLBQ9NRJ5 636 aaKnown RBP7.56□□□□□ -1.2
NUP88-211ENST00000575976 TBC1D23Q9NUY8 699 aa7.56□□□□□ -1.2
NUP88-211ENST00000575976 GRHPRQ9UBQ7 328 aa7.56□□□□□ -1.2
NUP88-211ENST00000575976 UPB1Q9UBR1 384 aa7.56□□□□□ -1.2
NUP88-211ENST00000575976 TMEFF2Q9UIK5 374 aaPredicted RBP7.56□□□□□ -1.2
NUP88-211ENST00000575976 POFUT2Q9Y2G5 429 aa7.56□□□□□ -1.2
NUP88-211ENST00000575976 PRRC2CQ9Y520 2896 aaKnown RBP7.56□□□□□ -1.2
NUP88-211ENST00000575976 TEX13CA0A0J9YWL9 993 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 H3BN98 237 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 C19orf84I3L1E1 186 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 M0R3G1 203 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 BHLHE40O14503 412 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 SOCS2O14508 198 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 EI24O14681 340 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 IMPA2O14732 288 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 ARPC3O15145 178 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 ARHGEF9O43307 516 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 KRT33AO76009 404 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 TXNDC12O95881 172 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 IGHG1P01857 330 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 PGA4P0DJD7 388 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 PGA3P0DJD8 388 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 APEHP13798 732 aaKnown RBP7.55□□□□□ -1.2
NUP88-211ENST00000575976 IGHV1-2P23083 117 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 POU1F1P28069 291 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 GRNP28799 593 aaKnown RBP7.55□□□□□ -1.2
NUP88-211ENST00000575976 SDHAP31040 664 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 CD79BP40259 229 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 CSNK1A1P48729 337 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 CLRN1P58418 232 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 MYBPC1Q00872 1141 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 TFF3Q07654 80 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 TSC22D1Q15714 1073 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 FBXL19-AS1Q494R0 122 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 MESTQ5EB52 335 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 C9orf135Q5VTT2 229 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 LPCAT4Q643R3 524 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 GPR139Q6DWJ6 353 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 ZBTB49Q6ZSB9 765 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 Q6ZT83 130 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 CXorf67Q86X51 503 aaPredicted RBP7.55□□□□□ -1.2
NUP88-211ENST00000575976 GPR137CQ8N3F9 429 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 CBR4Q8N4T8 237 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 POMGNT2Q8NAT1 580 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 SYT14Q8NB59 555 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 OR6N1Q8NGY5 312 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 TEX47Q8TBZ9 253 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 MAGEE2Q8TD90 523 aaPredicted RBP7.55□□□□□ -1.2
NUP88-211ENST00000575976 DNAJC9Q8WXX5 260 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 LRR1Q96L50 414 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 ALKBH3Q96Q83 286 aaPredicted RBP7.55□□□□□ -1.2
NUP88-211ENST00000575976 KCNK17Q96T54 332 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 SLC29A1Q99808 456 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 RBM4BQ9BQ04 359 aaKnown RBP7.55□□□□□ -1.2
NUP88-211ENST00000575976 C9orf16Q9BUW7 83 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 RBM4Q9BWF3 364 aaKnown RBP7.55□□□□□ -1.2
NUP88-211ENST00000575976 MRPL13Q9BYD1 178 aaKnown RBP7.55□□□□□ -1.2
NUP88-211ENST00000575976 KRT84Q9NSB2 600 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 GALNT8Q9NY28 637 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 ELOVL5Q9NYP7 299 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 USE1Q9NZ43 259 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 GLTPQ9NZD2 209 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 STX18Q9P2W9 335 aaKnown RBP7.55□□□□□ -1.2
NUP88-211ENST00000575976 NKX1-2Q9UD57 310 aaPredicted RBP7.55□□□□□ -1.2
NUP88-211ENST00000575976 MALT1Q9UDY8 824 aa7.55□□□□□ -1.2
NUP88-211ENST00000575976 FOXD3Q9UJU5 478 aaPredicted RBP7.55□□□□□ -1.2
NUP88-211ENST00000575976 HIVEP3Q5T1R4 2406 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 A1L4Q6 167 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 A6NIZ1 184 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 OR6C65A6NJZ3 312 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 CENPBD1B2RD01 187 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 RPL36A-HNRNPH2H7BZ11 118 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 H7C1C5 153 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 IDH3BO43837 385 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 MGRN1O60291 552 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 LYZL6O75951 148 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 CNOT4O95628 575 aaKnown RBP7.54□□□□□ -1.2
NUP88-211ENST00000575976 CLDN1O95832 211 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 ALPLP05186 524 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 ITGA5P08648 1049 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 QDPRP09417 244 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 HIST1H1CP16403 213 aaKnown RBP7.54□□□□□ -1.2
NUP88-211ENST00000575976 COX5AP20674 150 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 IGFBP5P24593 272 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 POLR2IP36954 125 aaKnown RBP7.54□□□□□ -1.2
NUP88-211ENST00000575976 CDKN2AP42771 156 aaKnown RBP7.54□□□□□ -1.2
NUP88-211ENST00000575976 GIPRP48546 466 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 ALDH3A2P51648 485 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 CRISP1P54107 249 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 RAP1BP61224 184 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 LCN6P62502 163 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms