RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 PRAMEF27A3QJZ7 478 aa15.13■□□□□ 0.01
CLK3-227ENST00000570296 MFN2O95140 757 aa15.13■□□□□ 0.01
CLK3-227ENST00000570296 SNAP29O95721 258 aa15.13■□□□□ 0.01
CLK3-227ENST00000570296 CPT2P23786 658 aa15.13■□□□□ 0.01
CLK3-227ENST00000570296 MMP15P51511 669 aa15.13■□□□□ 0.01
CLK3-227ENST00000570296 AQP5P55064 265 aa15.13■□□□□ 0.01
CLK3-227ENST00000570296 UCP2P55851 309 aa15.13■□□□□ 0.01
CLK3-227ENST00000570296 GNA13Q14344 377 aa15.13■□□□□ 0.01
CLK3-227ENST00000570296 GALNTL6Q49A17 601 aa15.13■□□□□ 0.01
CLK3-227ENST00000570296 OXLD1Q5BKU9 147 aa15.13■□□□□ 0.01
CLK3-227ENST00000570296 GPR157Q5UAW9 335 aa15.13■□□□□ 0.01
CLK3-227ENST00000570296 C1orf174Q8IYL3 243 aa15.13■□□□□ 0.01
CLK3-227ENST00000570296 SLC25A36Q96CQ1 311 aa15.13■□□□□ 0.01
CLK3-227ENST00000570296 THOC1Q96FV9 657 aaKnown RBP15.13■□□□□ 0.01
CLK3-227ENST00000570296 DCLRE1CQ96SD1 692 aaKnown RBP15.13■□□□□ 0.01
CLK3-227ENST00000570296 FOXB1Q99853 325 aa15.13■□□□□ 0.01
CLK3-227ENST00000570296 C1orf198Q9H425 327 aa15.13■□□□□ 0.01
CLK3-227ENST00000570296 NINJ2Q9NZG7 142 aa15.13■□□□□ 0.01
CLK3-227ENST00000570296 SAR1BQ9Y6B6 198 aa15.13■□□□□ 0.01
CLK3-227ENST00000570296 LOC102725191A0A1B0GVB3 256 aa15.12■□□□□ 0.01
CLK3-227ENST00000570296 PLSCR5A0PG75 271 aa15.12■□□□□ 0.01
CLK3-227ENST00000570296 ZSCAN12O43309 604 aa15.12■□□□□ 0.01
CLK3-227ENST00000570296 FZD7O75084 574 aa15.12■□□□□ 0.01
CLK3-227ENST00000570296 LYPLA1O75608 230 aaPredicted RBP15.12■□□□□ 0.01
CLK3-227ENST00000570296 SNRPAP09012 282 aaKnown RBP15.12■□□□□ 0.01
CLK3-227ENST00000570296 MAPK1P28482 360 aa15.12■□□□□ 0.01
CLK3-227ENST00000570296 LARS2Q15031 903 aaKnown RBP15.12■□□□□ 0.01
CLK3-227ENST00000570296 CHI3L2Q15782 390 aa15.12■□□□□ 0.01
CLK3-227ENST00000570296 WBP2NLQ6ICG8 309 aa15.12■□□□□ 0.01
CLK3-227ENST00000570296 C6orf89Q6UWU4 347 aa15.12■□□□□ 0.01
CLK3-227ENST00000570296 CCBE1Q6UXH8 406 aaPredicted RBP15.12■□□□□ 0.01
CLK3-227ENST00000570296 Q6ZSV7 163 aa15.12■□□□□ 0.01
CLK3-227ENST00000570296 CLEC4FQ8N1N0 589 aa15.12■□□□□ 0.01
CLK3-227ENST00000570296 RAB40AQ8WXH6 277 aa15.12■□□□□ 0.01
CLK3-227ENST00000570296 DACT3Q96B18 629 aaPredicted RBP15.12■□□□□ 0.01
CLK3-227ENST00000570296 NANOGQ9H9S0 305 aa15.12■□□□□ 0.01
CLK3-227ENST00000570296 CYSLTR2Q9NS75 346 aa15.12■□□□□ 0.01
CLK3-227ENST00000570296 DCAF16Q9NXF7 216 aa15.12■□□□□ 0.01
CLK3-227ENST00000570296 SACSQ9NZJ4 4579 aa15.11■□□□□ 0.01
CLK3-227ENST00000570296 GPR37O15354 613 aa15.11■□□□□ 0.01
CLK3-227ENST00000570296 XPNPEP2O43895 674 aa15.11■□□□□ 0.01
CLK3-227ENST00000570296 ZNF500O60304 480 aaPredicted RBP15.11■□□□□ 0.01
CLK3-227ENST00000570296 CD55P08174 381 aa15.11■□□□□ 0.01
CLK3-227ENST00000570296 LINC00032P0C843 101 aa15.11■□□□□ 0.01
CLK3-227ENST00000570296 COPZ1P61923 177 aa15.11■□□□□ 0.01
CLK3-227ENST00000570296 BTG1P62324 171 aa15.11■□□□□ 0.01
CLK3-227ENST00000570296 PTGR1Q14914 329 aa15.11■□□□□ 0.01
CLK3-227ENST00000570296 GPAT3Q53EU6 434 aa15.11■□□□□ 0.01
CLK3-227ENST00000570296 CFAP157Q5JU67 520 aa15.11■□□□□ 0.01
CLK3-227ENST00000570296 MRPL2Q5T653 305 aaKnown RBP15.11■□□□□ 0.01
CLK3-227ENST00000570296 CARD17Q5XLA6 110 aa15.11■□□□□ 0.01
CLK3-227ENST00000570296 TNFAIP8L2Q6P589 184 aaPredicted RBP15.11■□□□□ 0.01
CLK3-227ENST00000570296 GDPGP1Q6ZNW5 385 aa15.11■□□□□ 0.01
CLK3-227ENST00000570296 CADM2Q8N3J6 435 aa15.11■□□□□ 0.01
CLK3-227ENST00000570296 ICA1LQ8NDH6 482 aa15.11■□□□□ 0.01
CLK3-227ENST00000570296 DUSP26Q9BV47 211 aa15.11■□□□□ 0.01
CLK3-227ENST00000570296 PTDSS2Q9BVG9 487 aa15.11■□□□□ 0.01
CLK3-227ENST00000570296 SSBP3Q9BWW4 388 aaPredicted RBP15.11■□□□□ 0.01
CLK3-227ENST00000570296 RAB17Q9H0T7 212 aa15.11■□□□□ 0.01
CLK3-227ENST00000570296 TUBB1Q9H4B7 451 aa15.11■□□□□ 0.01
CLK3-227ENST00000570296 TMEM106BQ9NUM4 274 aa15.11■□□□□ 0.01
CLK3-227ENST00000570296 ZSCAN5BA6NJL1 495 aa15.1■□□□□ 0.01
CLK3-227ENST00000570296 TNFRSF13BO14836 293 aaPredicted RBP15.1■□□□□ 0.01
CLK3-227ENST00000570296 AIM2O14862 343 aa15.1■□□□□ 0.01
CLK3-227ENST00000570296 AZIN1O14977 448 aa15.1■□□□□ 0.01
CLK3-227ENST00000570296 ENTPD5O75356 428 aa15.1■□□□□ 0.01
CLK3-227ENST00000570296 PATE4P0C8F1 98 aa15.1■□□□□ 0.01
CLK3-227ENST00000570296 CCL2P13500 99 aa15.1■□□□□ 0.01
CLK3-227ENST00000570296 LIPAP38571 399 aa15.1■□□□□ 0.01
CLK3-227ENST00000570296 BST1Q10588 318 aa15.1■□□□□ 0.01
CLK3-227ENST00000570296 ZMYND11Q15326 602 aa15.1■□□□□ 0.01
CLK3-227ENST00000570296 TBC1D28Q2M2D7 210 aa15.1■□□□□ 0.01
CLK3-227ENST00000570296 TIFABQ6ZNK6 161 aa15.1■□□□□ 0.01
CLK3-227ENST00000570296 Q6ZTK2 550 aa15.1■□□□□ 0.01
CLK3-227ENST00000570296 PIWIL3Q7Z3Z3 882 aaKnown RBP15.1■□□□□ 0.01
CLK3-227ENST00000570296 SKA3Q8IX90 412 aa15.1■□□□□ 0.01
CLK3-227ENST00000570296 ZNF283Q8N7M2 679 aa15.1■□□□□ 0.01
CLK3-227ENST00000570296 OR1J2Q8NGS2 313 aa15.1■□□□□ 0.01
CLK3-227ENST00000570296 FGFBP3Q8TAT2 258 aa15.1■□□□□ 0.01
CLK3-227ENST00000570296 PNPT1Q8TCS8 783 aaKnown RBP15.1■□□□□ 0.01
CLK3-227ENST00000570296 GEMIN6Q8WXD5 167 aaKnown RBP15.1■□□□□ 0.01
CLK3-227ENST00000570296 ULBP2Q9BZM5 246 aa15.1■□□□□ 0.01
CLK3-227ENST00000570296 DPY30Q9C005 99 aa15.1■□□□□ 0.01
CLK3-227ENST00000570296 A4GALTQ9NPC4 353 aa15.1■□□□□ 0.01
CLK3-227ENST00000570296 CGGBP1Q9UFW8 167 aaPredicted RBP15.1■□□□□ 0.01
CLK3-227ENST00000570296 ZDHHC8Q9ULC8 765 aa15.1■□□□□ 0.01
CLK3-227ENST00000570296 KIR2DS1A0A191URI9 304 aa15.09■□□□□ 0.01
CLK3-227ENST00000570296 CHEK2O96017 543 aa15.09■□□□□ 0.01
CLK3-227ENST00000570296 MYL2P10916 166 aa15.09■□□□□ 0.01
CLK3-227ENST00000570296 IL7RP16871 459 aa15.09■□□□□ 0.01
CLK3-227ENST00000570296 PRPS1L1P21108 318 aa15.09■□□□□ 0.01
CLK3-227ENST00000570296 RPS4Y1P22090 263 aaKnown RBP15.09■□□□□ 0.01
CLK3-227ENST00000570296 MDH2P40926 338 aaKnown RBP15.09■□□□□ 0.01
CLK3-227ENST00000570296 RPS5P46782 204 aaKnown RBP15.09■□□□□ 0.01
CLK3-227ENST00000570296 HERPUD1Q15011 391 aa15.09■□□□□ 0.01
CLK3-227ENST00000570296 ZNF774Q6NX45 483 aa15.09■□□□□ 0.01
CLK3-227ENST00000570296 MUC20Q8N307 709 aaPredicted RBP15.09■□□□□ 0.01
CLK3-227ENST00000570296 PHF21AQ96BD5 680 aa15.09■□□□□ 0.01
CLK3-227ENST00000570296 LRMDAQ9H2I8 198 aa15.09■□□□□ 0.01
CLK3-227ENST00000570296 FN3KRPQ9HA64 309 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms