RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 PCYT1AP49585 367 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 ALDH3A2P51648 485 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 PER3P56645 1201 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 CDK5Q00535 292 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 FMODQ06828 376 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 CAMK2DQ13557 499 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 DAG1Q14118 895 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 SLC25A35Q3KQZ1 300 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 CLEC12AQ5QGZ9 265 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 TMEM201Q5SNT2 666 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 TMEM236Q5W0B7 351 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 FBXW9Q5XUX1 488 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 GTF2IRD2BQ6EKJ0 949 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 MTFR2Q6P444 385 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 NIPAL3Q6P499 406 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 CASP12Q6UXS9 341 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 STAC2Q6ZMT1 411 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 DPY19L2P2Q6ZN68 376 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 Q6ZT83 130 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 HIST3H2AQ7L7L0 130 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 AAED1Q7RTV5 226 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 GTF2IRD2Q86UP8 949 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 C10orf67Q8IYJ2 551 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 CDK20Q8IZL9 346 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 FAM26EQ8N5C1 309 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 NPEPL1Q8NDH3 523 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 MAGEE2Q8TD90 523 aaPredicted RBP8.18□□□□□ -1.1
VPS35-211ENST00000569950 ZNRF4Q8WWF5 429 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 ASB5Q8WWX0 329 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 HIST1H2ACQ93077 130 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 APH1AQ96BI3 265 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 SLC25A44Q96H78 314 aaPredicted RBP8.18□□□□□ -1.1
VPS35-211ENST00000569950 GABARAPL3Q9BY60 117 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 NMNAT2Q9BZQ4 307 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 SLCO5A1Q9H2Y9 848 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 PIGMQ9H3S5 423 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 SLC25A19Q9HC21 320 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 PAPOLBQ9NRJ5 636 aaKnown RBP8.18□□□□□ -1.1
VPS35-211ENST00000569950 GALNT8Q9NY28 637 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 PROCRQ9UNN8 238 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 EMC9Q9Y3B6 208 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 UGT2A1Q9Y4X1 527 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 IER3IP1Q9Y5U9 82 aa8.18□□□□□ -1.1
VPS35-211ENST00000569950 SETXQ7Z333 2677 aaKnown RBP8.17□□□□□ -1.1
VPS35-211ENST00000569950 TEX13CA0A0J9YWL9 993 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 SLC22A23A1A5C7 686 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 OR6C68A6NDL8 312 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 ZNF503-AS2A6NEH8 195 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 FAM90A27PA6NNH2 459 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 ZAR1LA6NP61 321 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 H7C1C5 153 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 MRPL33O75394 65 aaKnown RBP8.17□□□□□ -1.1
VPS35-211ENST00000569950 OR6A2O95222 327 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 CLDN14O95500 239 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 CNOT4O95628 575 aaKnown RBP8.17□□□□□ -1.1
VPS35-211ENST00000569950 ATP6V1G2O95670 118 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 BAG2O95816 211 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 BCL10O95999 233 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 ACADSP16219 412 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 HIST1H1CP16403 213 aaKnown RBP8.17□□□□□ -1.1
VPS35-211ENST00000569950 NOS3P29474 1203 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 SDHAP31040 664 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 SLC6A6P31641 620 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 GIPRP48546 466 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 ASCL1P50553 236 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 CRISP1P54107 249 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 LCN6P62502 163 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 FAM27E3Q08E93 113 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 TOP3AQ13472 1001 aaPredicted RBP8.17□□□□□ -1.1
VPS35-211ENST00000569950 C1DQ13901 141 aaKnown RBP8.17□□□□□ -1.1
VPS35-211ENST00000569950 TAF11Q15544 211 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 TRIP10Q15642 601 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 TSC22D1Q15714 1073 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 PGGHGQ32M88 737 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 C10orf128Q5T292 105 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 XKRXQ6PP77 449 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 SLC25A47Q6Q0C1 308 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 FOXL2NBQ6ZUU3 175 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 ZNF627Q7L945 461 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 LUZP2Q86TE4 346 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 MCEMP1Q8IX19 187 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 ZNF433Q8N7K0 673 aaPredicted RBP8.17□□□□□ -1.1
VPS35-211ENST00000569950 ATG16L2Q8NAA4 619 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 NOXO1Q8NFA2 376 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 SSC4DQ8WTU2 575 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 DNAJC9Q8WXX5 260 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 STMN2Q93045 179 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 BOD1Q96IK1 185 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 LRR1Q96L50 414 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 ADAD1Q96M93 576 aaKnown RBP8.17□□□□□ -1.1
VPS35-211ENST00000569950 PSMG3-AS1Q96PY0 264 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 ALKBH3Q96Q83 286 aaPredicted RBP8.17□□□□□ -1.1
VPS35-211ENST00000569950 RBM4Q9BWF3 364 aaKnown RBP8.17□□□□□ -1.1
VPS35-211ENST00000569950 TSSK6Q9BXA6 273 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 HCAR1Q9BXC0 346 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 POLDIP3Q9BY77 421 aaKnown RBP8.17□□□□□ -1.1
VPS35-211ENST00000569950 GRIP2Q9C0E4 1043 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 GPR35Q9HC97 309 aa8.17□□□□□ -1.1
VPS35-211ENST00000569950 KRCC1Q9NPI7 259 aaPredicted RBP8.17□□□□□ -1.1
VPS35-211ENST00000569950 ZNF224Q9NZL3 707 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms