RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 PGA4P0DJD7 388 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 PGA3P0DJD8 388 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 IFI30P13284 250 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 CBR1P16152 277 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 MAKP20794 623 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 PAX7P23759 505 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 TTKP33981 857 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 ATP5J2P56134 94 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 KRT72Q14CN4 511 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 TRAM2Q15035 370 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 ZNF627Q7L945 461 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 DTX2Q86UW9 622 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 MYPOPQ86VE0 399 aaPredicted RBP13.08□□□□□ -0.32
VPS39-210ENST00000568357 NRMQ8IXM6 262 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 FAM169BQ8N8A8 192 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 ZNF566Q969W8 418 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 C7orf34Q96L11 122 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 GORASP2Q9H8Y8 452 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 NMNAT1Q9HAN9 279 aaPredicted RBP13.08□□□□□ -0.32
VPS39-210ENST00000568357 INIPQ9NRY2 104 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 B3GNT2Q9NY97 397 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 NDUFAF4Q9P032 175 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 POFUT2Q9Y2G5 429 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 ENPP4Q9Y6X5 453 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 ALPK2Q86TB3 2170 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 DSCAMO60469 2012 aa13.08□□□□□ -0.32
VPS39-210ENST00000568357 CSPG4Q6UVK1 2322 aa13.07□□□□□ -0.32
VPS39-210ENST00000568357 A0A087WUU8 490 aa13.07□□□□□ -0.32
VPS39-210ENST00000568357 A0A1W2PRG6 482 aa13.07□□□□□ -0.32
VPS39-210ENST00000568357 NDUFS7O75251 213 aa13.07□□□□□ -0.32
VPS39-210ENST00000568357 FAM107AO95990 144 aa13.07□□□□□ -0.32
VPS39-210ENST00000568357 IGKV3-15P01624 115 aa13.07□□□□□ -0.32
VPS39-210ENST00000568357 HLA-HP01893 362 aa13.07□□□□□ -0.32
VPS39-210ENST00000568357 CECR9P0C854 216 aa13.07□□□□□ -0.32
VPS39-210ENST00000568357 B4GALT1P15291 398 aa13.07□□□□□ -0.32
VPS39-210ENST00000568357 FABP6P51161 128 aa13.07□□□□□ -0.32
VPS39-210ENST00000568357 PRKCDQ05655 676 aa13.07□□□□□ -0.32
VPS39-210ENST00000568357 FHL1Q13642 323 aa13.07□□□□□ -0.32
VPS39-210ENST00000568357 GKAP1Q5VSY0 366 aaPredicted RBP13.07□□□□□ -0.32
VPS39-210ENST00000568357 AGAP6Q5VW22 663 aa13.07□□□□□ -0.32
VPS39-210ENST00000568357 ZNF813Q6ZN06 617 aa13.07□□□□□ -0.32
VPS39-210ENST00000568357 MDP1Q86V88 176 aa13.07□□□□□ -0.32
VPS39-210ENST00000568357 CCDC36Q8IYA8 594 aa13.07□□□□□ -0.32
VPS39-210ENST00000568357 DEFB107AQ8IZN7 70 aa13.07□□□□□ -0.32
VPS39-210ENST00000568357 CIARTQ8N365 385 aaPredicted RBP13.07□□□□□ -0.32
VPS39-210ENST00000568357 ASB10Q8WXI3 467 aa13.07□□□□□ -0.32
VPS39-210ENST00000568357 ACOT11Q8WXI4 607 aaPredicted RBP13.07□□□□□ -0.32
VPS39-210ENST00000568357 GTPBP3Q969Y2 492 aaKnown RBP13.07□□□□□ -0.32
VPS39-210ENST00000568357 Q96MF0 132 aa13.07□□□□□ -0.32
VPS39-210ENST00000568357 MRPL13Q9BYD1 178 aaKnown RBP13.07□□□□□ -0.32
VPS39-210ENST00000568357 GRIP2Q9C0E4 1043 aa13.07□□□□□ -0.32
VPS39-210ENST00000568357 NOX3Q9HBY0 568 aa13.07□□□□□ -0.32
VPS39-210ENST00000568357 FAIMQ9NVQ4 179 aa13.07□□□□□ -0.32
VPS39-210ENST00000568357 JMJD1CQ15652 2540 aa13.07□□□□□ -0.32
VPS39-210ENST00000568357 HTR3EA5X5Y0 456 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 TRIM64A6NGJ6 449 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 TRIM64BA6NI03 449 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 B2RBV5 119 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 hCG_2039718K7EN88 272 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 GMNNO75496 209 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 QDPRP09417 244 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 CALCRP30988 508 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 ARR3P36575 388 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 CAPZA2P47755 286 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 IDH3GP51553 393 aaPredicted RBP13.06□□□□□ -0.32
VPS39-210ENST00000568357 VLDLRP98155 873 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 NAAAQ02083 359 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 PIGFQ07326 219 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 HIST3H3Q16695 136 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 C3orf36Q3SXR2 165 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 IQCCQ4KMZ1 466 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 SAMD4BQ5PRF9 694 aaKnown RBP13.06□□□□□ -0.32
VPS39-210ENST00000568357 ARMC4Q5T2S8 1044 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 C11orf71Q6IPW1 123 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 ZNF544Q6NX49 715 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 C16orf89Q6UX73 402 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 CLEC9AQ6UXN8 241 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 ZNF730Q6ZMV8 503 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 MBOAT2Q6ZWT7 520 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 SKA3Q8IX90 412 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 RNF113BQ8IZP6 322 aaKnown RBP13.06□□□□□ -0.32
VPS39-210ENST00000568357 MUC15Q8N387 334 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 LRRC75AQ8NAA5 344 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 CCDC197Q8NCU1 140 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 OR51A7Q8NH64 312 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 MCHR2Q969V1 340 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 NSL1Q96IY1 281 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 TNFRSF13CQ96RJ3 184 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 ZNF347Q96SE7 839 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 SEPHS2Q99611 448 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 FOXB1Q99853 325 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 KATNB1Q9BVA0 655 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 CBLN4Q9NTU7 201 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 ZNF224Q9NZL3 707 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 GDF2Q9UK05 429 aaPredicted RBP13.06□□□□□ -0.32
VPS39-210ENST00000568357 SAMD4AQ9UPU9 718 aaKnown RBP13.06□□□□□ -0.32
VPS39-210ENST00000568357 HIF3AQ9Y2N7 669 aa13.06□□□□□ -0.32
VPS39-210ENST00000568357 TRAV27A0A087WT01 109 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 EFCAB9A8MZ26 197 aa13.05□□□□□ -0.32
VPS39-210ENST00000568357 DHHO43323 396 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms