RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 ADAM18Q9Y3Q7 739 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 UGT2A1Q9Y4X1 527 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 NOX1Q9Y5S8 564 aa8.06□□□□□ -1.12
VPS35-206ENST00000565228 EFCAB9A8MZ26 197 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 GADD45GO95257 159 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 SLC2A10O95528 541 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 GASTP01350 101 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 PATE4P0C8F1 98 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 IL32P24001 234 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 SSTR2P30874 369 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 GSSP48637 474 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 ZNF133P52736 654 aaPredicted RBP8.05□□□□□ -1.12
VPS35-206ENST00000565228 CTXN1P60606 82 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 ERVK-25P63136 954 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 ETFDHQ16134 617 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 DNAL1Q4LDG9 190 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 MESTQ5EB52 335 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 TIMM23BQ5SRD1 257 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 NCMAPQ5T1S8 102 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 HMBOX1Q6NT76 420 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 C1orf94Q6P1W5 598 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 PTCHD4Q6ZW05 846 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 TMEM200AQ86VY9 491 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 RNF113BQ8IZP6 322 aaKnown RBP8.05□□□□□ -1.12
VPS35-206ENST00000565228 POMGNT2Q8NAT1 580 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 PAPD5Q8NDF8 572 aaKnown RBP8.05□□□□□ -1.12
VPS35-206ENST00000565228 ANKK1Q8NFD2 765 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 STEAP2Q8NFT2 490 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 KBTBD8Q8NFY9 601 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 Q96M85 177 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 KCNK17Q96T54 332 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 POLDIP3Q9BY77 421 aaKnown RBP8.05□□□□□ -1.12
VPS35-206ENST00000565228 PLA2G12AQ9BZM1 189 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 CLEC4MQ9H2X3 399 aaPredicted RBP8.05□□□□□ -1.12
VPS35-206ENST00000565228 MUC13Q9H3R2 512 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 MAGIXQ9H6Y5 334 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 INIPQ9NRY2 104 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 PARPBPQ9NWS1 579 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 GLTPQ9NZD2 209 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 UPB1Q9UBR1 384 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 U3KQV3 271 aa8.05□□□□□ -1.12
VPS35-206ENST00000565228 ARFGEF3Q5TH69 2177 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 ARID1AO14497 2285 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 DHRS12A0PJE2 317 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 AQP12BA6NM10 295 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 SHISA9B4DS77 424 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 DCTN6O00399 190 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 SLC43A1O75387 559 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 GPANK1O95872 356 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 SAGP10523 405 aaPredicted RBP8.04□□□□□ -1.12
VPS35-206ENST00000565228 ACADSP16219 412 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 CALCRP30988 508 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 CDAP32320 146 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 SLC9A3P48764 834 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 ZNF83P51522 516 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 BSPH1Q075Z2 132 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 TOP3AQ13472 1001 aaPredicted RBP8.04□□□□□ -1.12
VPS35-206ENST00000565228 PPA1Q15181 289 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 MSMPQ1L6U9 139 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 KRTAP21-3Q3LHN1 58 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 ZBED5Q49AG3 693 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 ALG10Q5BKT4 473 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 MTX3Q5HYI7 312 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 ZNF362Q5T0B9 420 aaPredicted RBP8.04□□□□□ -1.12
VPS35-206ENST00000565228 SLC25A47Q6Q0C1 308 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 KLHL24Q6TFL4 600 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 ZNF627Q7L945 461 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 OAFQ86UD1 273 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 KRTAP1-3Q8IUG1 177 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 AQP12AQ8IXF9 295 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 SYT14Q8NB59 555 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 NOXO1Q8NFA2 376 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 ZNRF4Q8WWF5 429 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 MCHR2Q969V1 340 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 NABP1Q96AH0 204 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 RASD2Q96D21 266 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 LRRC46Q96FV0 321 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 RSRC1Q96IZ7 334 aaKnown RBP8.04□□□□□ -1.12
VPS35-206ENST00000565228 LRR1Q96L50 414 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 DDOQ99489 341 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 NIPSNAP1Q9BPW8 284 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 KATNB1Q9BVA0 655 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 HDHD5Q9BXW7 423 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 TXNIPQ9H3M7 391 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 EGLN3Q9H6Z9 239 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 CCM2LQ9NUG4 571 aaPredicted RBP8.04□□□□□ -1.12
VPS35-206ENST00000565228 B3GNT2Q9NY97 397 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 NDRG3Q9UGV2 375 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 FAM32AQ9Y421 112 aaKnown RBP8.04□□□□□ -1.12
VPS35-206ENST00000565228 NIPBLQ6KC79 2804 aaeCLIP8.04□□□□□ -1.12
VPS35-206ENST00000565228 F8P00451 2351 aa8.04□□□□□ -1.12
VPS35-206ENST00000565228 IGHV1-18A0A0C4DH31 117 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 CIB4A0PJX0 185 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 UNC119BA6NIH7 251 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 ZNF587BE7ETH6 402 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 TNFRSF11BO00300 401 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 FKBP6O75344 327 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 GMNNO75496 209 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 TIPRLO75663 272 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 PPP1R3DO95685 299 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms