RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 NUDCD3Q8IVD9 361 aa3.25□□□□□ -1.89
LINC00560-201ENST00000564593 UBE2J2Q8N2K1 259 aa3.25□□□□□ -1.89
LINC00560-201ENST00000564593 ACOT4Q8N9L9 421 aa3.25□□□□□ -1.89
LINC00560-201ENST00000564593 NEIL3Q8TAT5 605 aa3.25□□□□□ -1.89
LINC00560-201ENST00000564593 FAM151AQ8WW52 585 aa3.25□□□□□ -1.89
LINC00560-201ENST00000564593 UCN3Q969E3 161 aa3.25□□□□□ -1.89
LINC00560-201ENST00000564593 RPUSD4Q96CM3 377 aaKnown RBP3.25□□□□□ -1.89
LINC00560-201ENST00000564593 FMO2Q99518 471 aa3.25□□□□□ -1.89
LINC00560-201ENST00000564593 PPA2Q9H2U2 334 aa3.25□□□□□ -1.89
LINC00560-201ENST00000564593 RNF167Q9H6Y7 350 aa3.25□□□□□ -1.89
LINC00560-201ENST00000564593 NMRAL1Q9HBL8 299 aa3.25□□□□□ -1.89
LINC00560-201ENST00000564593 SUN2Q9UH99 717 aa3.25□□□□□ -1.89
LINC00560-201ENST00000564593 RRP15Q9Y3B9 282 aaKnown RBP3.25□□□□□ -1.89
LINC00560-201ENST00000564593 NPHP4O75161 1426 aaPredicted RBP3.24□□□□□ -1.89
LINC00560-201ENST00000564593 MYH3P11055 1940 aa3.24□□□□□ -1.89
LINC00560-201ENST00000564593 CCDC171Q6TFL3 1326 aa3.24□□□□□ -1.89
LINC00560-201ENST00000564593 ATRXP46100 2492 aa3.24□□□□□ -1.89
LINC00560-201ENST00000564593 RGPD5Q99666 1765 aa3.24□□□□□ -1.89
LINC00560-201ENST00000564593 PSMB11A5LHX3 300 aa3.24□□□□□ -1.89
LINC00560-201ENST00000564593 OR5B21A6NL26 309 aa3.24□□□□□ -1.89
LINC00560-201ENST00000564593 HAS3O00219 553 aa3.24□□□□□ -1.89
LINC00560-201ENST00000564593 SNX4O95219 450 aa3.24□□□□□ -1.89
LINC00560-201ENST00000564593 RPS2P15880 293 aaKnown RBP3.24□□□□□ -1.89
LINC00560-201ENST00000564593 HTR1EP28566 365 aa3.24□□□□□ -1.89
LINC00560-201ENST00000564593 CD1CP29017 333 aa3.24□□□□□ -1.89
LINC00560-201ENST00000564593 VDAC2P45880 294 aaPredicted RBP3.24□□□□□ -1.89
LINC00560-201ENST00000564593 GYG1P46976 350 aa3.24□□□□□ -1.89
LINC00560-201ENST00000564593 TAS2R19P59542 299 aa3.24□□□□□ -1.89
LINC00560-201ENST00000564593 ZNF630Q2M218 657 aaPredicted RBP3.24□□□□□ -1.89
LINC00560-201ENST00000564593 PAGE3Q5JUK9 113 aa3.24□□□□□ -1.89
LINC00560-201ENST00000564593 CTSL3PQ5NE16 218 aa3.24□□□□□ -1.89
LINC00560-201ENST00000564593 ZNF530Q6P9A1 599 aaPredicted RBP3.24□□□□□ -1.89
LINC00560-201ENST00000564593 RNF165Q6ZSG1 346 aa3.24□□□□□ -1.89
LINC00560-201ENST00000564593 H2BFWTQ7Z2G1 175 aa3.24□□□□□ -1.89
LINC00560-201ENST00000564593 C20orf203Q8NBC4 194 aa3.24□□□□□ -1.89
LINC00560-201ENST00000564593 TM4SF19Q96DZ7 209 aa3.24□□□□□ -1.89
LINC00560-201ENST00000564593 RIOK1Q9BRS2 568 aaKnown RBP3.24□□□□□ -1.89
LINC00560-201ENST00000564593 KCNIP1Q9NZI2 227 aa3.24□□□□□ -1.89
LINC00560-201ENST00000564593 C5P01031 1676 aa3.24□□□□□ -1.89
LINC00560-201ENST00000564593 UBR2Q8IWV8 1755 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 GOLGA6L4A6NEF3 574 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 E9PBE3 544 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 AGPAT2O15120 278 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 ETS2P15036 469 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 ABOP16442 354 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 CHMLP26374 656 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 DLX1P56177 255 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 WNT4P56705 351 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 ACTR3P61158 418 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 SCRN3Q0VDG4 424 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 BST1Q10588 318 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 MRPL28Q13084 256 aaKnown RBP3.23□□□□□ -1.89
LINC00560-201ENST00000564593 ATP6AP1Q15904 470 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 BOLA3Q53S33 107 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 C6orf226Q5I0X4 101 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 CCDC183Q5T5S1 534 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 SH2D6Q7Z4S9 175 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 PNKDQ8N490 385 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 NECAB1Q8N987 351 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 DCAF4L2Q8NA75 395 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 FNDC5Q8NAU1 212 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 OR6C4Q8NGE1 309 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 OR9G1Q8NH87 305 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 ITCHQ96J02 903 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 IFT74Q96LB3 600 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 KCNA7Q96RP8 456 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 ANKRD19PQ9H560 264 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 GIN1Q9NXP7 522 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 MTRF1LQ9UGC7 380 aaKnown RBP3.23□□□□□ -1.89
LINC00560-201ENST00000564593 NUP188Q5SRE5 1749 aa3.23□□□□□ -1.89
LINC00560-201ENST00000564593 H0Y8G0 127 aa3.22□□□□□ -1.89
LINC00560-201ENST00000564593 DUX4L4P0CJ87 422 aa3.22□□□□□ -1.89
LINC00560-201ENST00000564593 ATP1B2P14415 290 aaPredicted RBP3.22□□□□□ -1.89
LINC00560-201ENST00000564593 PBLDP30039 288 aaPredicted RBP3.22□□□□□ -1.89
LINC00560-201ENST00000564593 PRDX3P30048 256 aaKnown RBP3.22□□□□□ -1.89
LINC00560-201ENST00000564593 FMO3P31513 532 aa3.22□□□□□ -1.89
LINC00560-201ENST00000564593 SULT1E1P49888 294 aa3.22□□□□□ -1.89
LINC00560-201ENST00000564593 NUP107P57740 925 aa3.22□□□□□ -1.89
LINC00560-201ENST00000564593 KRTAP10-3P60369 221 aa3.22□□□□□ -1.89
LINC00560-201ENST00000564593 LRRC74AQ0VAA2 488 aa3.22□□□□□ -1.89
LINC00560-201ENST00000564593 PSG7Q13046 419 aa3.22□□□□□ -1.89
LINC00560-201ENST00000564593 NRF1Q16656 503 aa3.22□□□□□ -1.89
LINC00560-201ENST00000564593 KCTD21Q4G0X4 260 aa3.22□□□□□ -1.89
LINC00560-201ENST00000564593 CASC10Q5T4H9 136 aa3.22□□□□□ -1.89
LINC00560-201ENST00000564593 LRRC31Q6UY01 552 aa3.22□□□□□ -1.89
LINC00560-201ENST00000564593 NANOGNBQ7Z5D8 188 aa3.22□□□□□ -1.89
LINC00560-201ENST00000564593 PLA2G4DQ86XP0 818 aa3.22□□□□□ -1.89
LINC00560-201ENST00000564593 TTC5Q8N0Z6 440 aa3.22□□□□□ -1.89
LINC00560-201ENST00000564593 FANK1Q8TC84 345 aa3.22□□□□□ -1.89
LINC00560-201ENST00000564593 ARPC1AQ92747 370 aa3.22□□□□□ -1.89
LINC00560-201ENST00000564593 PANX2Q96RD6 677 aa3.22□□□□□ -1.89
LINC00560-201ENST00000564593 CNN2Q99439 309 aaKnown RBP3.22□□□□□ -1.89
LINC00560-201ENST00000564593 NIPAL2Q9H841 368 aa3.22□□□□□ -1.89
LINC00560-201ENST00000564593 METTL7AQ9H8H3 244 aa3.22□□□□□ -1.89
LINC00560-201ENST00000564593 NANOGQ9H9S0 305 aa3.22□□□□□ -1.89
LINC00560-201ENST00000564593 MMP17Q9ULZ9 603 aa3.22□□□□□ -1.89
LINC00560-201ENST00000564593 NEUROG3Q9Y4Z2 214 aa3.22□□□□□ -1.89
LINC00560-201ENST00000564593 N6AMT1Q9Y5N5 214 aa3.22□□□□□ -1.89
LINC00560-201ENST00000564593 ANKRD36CQ5JPF3 1778 aa3.22□□□□□ -1.89
LINC00560-201ENST00000564593 PAPPAQ13219 1627 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms