RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 COMMD4Q9H0A8 199 aa4.51□□□□□ -1.69
VPS35P1-201ENST00000563400 ASB8Q9H765 288 aa4.51□□□□□ -1.69
VPS35P1-201ENST00000563400 APOBEC3GQ9HC16 384 aaKnown RBP4.51□□□□□ -1.69
VPS35P1-201ENST00000563400 ZDHHC4Q9NPG8 344 aa4.51□□□□□ -1.69
VPS35P1-201ENST00000563400 MED4Q9NPJ6 270 aa4.51□□□□□ -1.69
VPS35P1-201ENST00000563400 DEC1Q9P2X7 70 aa4.51□□□□□ -1.69
VPS35P1-201ENST00000563400 LNPEPQ9UIQ6 1025 aa4.51□□□□□ -1.69
VPS35P1-201ENST00000563400 FBXL4Q9UKA2 621 aa4.51□□□□□ -1.69
VPS35P1-201ENST00000563400 NUP50Q9UKX7 468 aa4.51□□□□□ -1.69
VPS35P1-201ENST00000563400 OR2W1Q9Y3N9 320 aa4.51□□□□□ -1.69
VPS35P1-201ENST00000563400 ALPK3Q96L96 1907 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 A0A0J9YVX5 310 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 ERI2A8K979 691 aaKnown RBP4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 MIF4GDA9UHW6 222 aaKnown RBP4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 KIAA0513O60268 411 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 CNOT3O75175 753 aaKnown RBP4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 CLDN11O75508 207 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 KHDRBS3O75525 346 aaKnown RBP4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 SEC24AO95486 1093 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 ACTL6AO96019 429 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 SERPINA6P08185 405 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 OR4Q2P0C623 313 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 ZDHHC11BP0C7U3 371 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 OCMP0CE72 109 aaPredicted RBP4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 PSKH1P11801 424 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 GM2AP17900 193 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 HTR2CP28335 458 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 PRDX3P30048 256 aaKnown RBP4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 SSTR2P30874 369 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 PCK1P35558 622 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 NBL1P41271 181 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 RPL34P49207 117 aaKnown RBP4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 SELENOPP49908 381 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 DNA2P51530 1060 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 KPNA2P52292 529 aaKnown RBP4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 XGP55808 180 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 OR1D5P58170 312 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 ACTBP60709 375 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 UBE2KP61086 200 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 RPL27P61353 136 aaKnown RBP4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 ATP6V0D1P61421 351 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 RPS15AP62244 130 aaKnown RBP4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 ACTA2P62736 377 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 ACTG1P63261 375 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 ACTG2P63267 376 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 ACTC1P68032 377 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 ACTA1P68133 377 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 MRPS21P82921 87 aaKnown RBP4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 RGS1Q08116 209 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 FCHO2Q0JRZ9 810 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 MFAP5Q13361 173 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 RUNX3Q13761 415 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 TFDP2Q14188 446 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 PDK2Q15119 407 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 TEAD2Q15562 447 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 GABRA6Q16445 453 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 HLA-BQ31612 363 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 TMEM35AQ53FP2 167 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 HHATQ5VTY9 493 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 PAPD7Q5XG87 772 aaKnown RBP4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 STUMQ69YW2 141 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 TYW3Q6IPR3 259 aaKnown RBP4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 BTNL3Q6UXE8 466 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 CD300LGQ6UXG3 332 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 SETD3Q86TU7 594 aaPredicted RBP4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 FUNDC1Q8IVP5 155 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 GPALPP1Q8IXQ4 340 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 SPAG16Q8N0X2 631 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 CDRT4Q8N9R6 151 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 OR5M1Q8NGP8 315 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 OR1J1Q8NGS3 322 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 OR52N5Q8NH56 324 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 ISOC2Q96AB3 205 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 C4orf45Q96LM5 186 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 TNFRSF13CQ96RJ3 184 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 ATP5SQ99766 215 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 ZNF251Q9BRH9 671 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 ULBP1Q9BZM6 244 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 LAT2Q9GZY6 243 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 NHEJ1Q9H9Q4 299 aaPredicted RBP4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 SDR39U1Q9NRG7 319 aaPredicted RBP4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 TMEM45AQ9NWC5 275 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 GPATCH2LQ9NWQ4 482 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 DDIT4Q9NX09 232 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 ZDHHC2Q9UIJ5 367 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 RAB23Q9ULC3 237 aa4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 AK6Q9Y3D8 172 aaKnown RBP4.5□□□□□ -1.69
VPS35P1-201ENST00000563400 ZCWPW2A0A1B0GU75 182 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 OR5K4A6NMS3 321 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 SNURFLB1AK76 121 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 PATE3B3GLJ2 98 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 LOC730098B7Z3J9 87 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 GOLGA8KD6RF30 607 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 E5RJQ4 531 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 CCSO14618 274 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 AIM2O14862 343 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 LIN7AO14910 233 aaPredicted RBP4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 GPX5O75715 221 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 JTBO76095 146 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 FARS2O95363 451 aaKnown RBP4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms