RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 ZNF837Q96EG3 531 aaPredicted RBP14.65□□□□□ -0.06
CLK3-207ENST00000562389 PLPPR2Q96GM1 343 aa14.65□□□□□ -0.06
CLK3-207ENST00000562389 GPX7Q96SL4 187 aaPredicted RBP14.65□□□□□ -0.06
CLK3-207ENST00000562389 GPA33Q99795 319 aa14.65□□□□□ -0.06
CLK3-207ENST00000562389 MRPL13Q9BYD1 178 aaKnown RBP14.65□□□□□ -0.06
CLK3-207ENST00000562389 REEP1Q9H902 201 aa14.65□□□□□ -0.06
CLK3-207ENST00000562389 NPAP1Q9NZP6 1156 aa14.65□□□□□ -0.06
CLK3-207ENST00000562389 FBN2P35556 2912 aa14.65□□□□□ -0.06
CLK3-207ENST00000562389 ABCA4P78363 2273 aa14.64□□□□□ -0.07
CLK3-207ENST00000562389 ARPC4-TTLL3A0A0A6YYG9 625 aa14.64□□□□□ -0.07
CLK3-207ENST00000562389 A0A1W2PPR1 153 aa14.64□□□□□ -0.07
CLK3-207ENST00000562389 A0A1W2PR80 420 aa14.64□□□□□ -0.07
CLK3-207ENST00000562389 TRMUO75648 421 aaKnown RBP14.64□□□□□ -0.07
CLK3-207ENST00000562389 NDUFB2O95178 105 aa14.64□□□□□ -0.07
CLK3-207ENST00000562389 HOXB1P14653 301 aaPredicted RBP14.64□□□□□ -0.07
CLK3-207ENST00000562389 ACADSP16219 412 aa14.64□□□□□ -0.07
CLK3-207ENST00000562389 ZNF26P17031 533 aaPredicted RBP14.64□□□□□ -0.07
CLK3-207ENST00000562389 PAX7P23759 505 aa14.64□□□□□ -0.07
CLK3-207ENST00000562389 CLRN1P58418 232 aa14.64□□□□□ -0.07
CLK3-207ENST00000562389 ARF1P84077 181 aaKnown RBP14.64□□□□□ -0.07
CLK3-207ENST00000562389 RUNX1T1Q06455 604 aa14.64□□□□□ -0.07
CLK3-207ENST00000562389 TOP3AQ13472 1001 aaPredicted RBP14.64□□□□□ -0.07
CLK3-207ENST00000562389 HIKESHIQ53FT3 197 aa14.64□□□□□ -0.07
CLK3-207ENST00000562389 NCMAPQ5T1S8 102 aa14.64□□□□□ -0.07
CLK3-207ENST00000562389 ALKBH2Q6NS38 261 aa14.64□□□□□ -0.07
CLK3-207ENST00000562389 PGBD2Q6P3X8 592 aa14.64□□□□□ -0.07
CLK3-207ENST00000562389 KLHL24Q6TFL4 600 aa14.64□□□□□ -0.07
CLK3-207ENST00000562389 ZNF627Q7L945 461 aa14.64□□□□□ -0.07
CLK3-207ENST00000562389 IGFN1Q86VF2 1251 aa14.64□□□□□ -0.07
CLK3-207ENST00000562389 HS3ST6Q96QI5 342 aa14.64□□□□□ -0.07
CLK3-207ENST00000562389 TSPAN32Q96QS1 320 aa14.64□□□□□ -0.07
CLK3-207ENST00000562389 ESRP2Q9H6T0 727 aaKnown RBP14.64□□□□□ -0.07
CLK3-207ENST00000562389 PLEKHF2Q9H8W4 249 aa14.64□□□□□ -0.07
CLK3-207ENST00000562389 VNN3Q9NY84 501 aa14.64□□□□□ -0.07
CLK3-207ENST00000562389 ZNF346Q9UL40 294 aaKnown RBP14.64□□□□□ -0.07
CLK3-207ENST00000562389 SAMHD1Q9Y3Z3 626 aaKnown RBP14.64□□□□□ -0.07
CLK3-207ENST00000562389 MAGED1Q9Y5V3 778 aaPredicted RBP14.64□□□□□ -0.07
CLK3-207ENST00000562389 RAI1Q7Z5J4 1906 aaPredicted RBP14.63□□□□□ -0.07
CLK3-207ENST00000562389 CCNB2O95067 398 aa14.63□□□□□ -0.07
CLK3-207ENST00000562389 WNT11O96014 354 aa14.63□□□□□ -0.07
CLK3-207ENST00000562389 CST1P01037 141 aa14.63□□□□□ -0.07
CLK3-207ENST00000562389 CD14P08571 375 aa14.63□□□□□ -0.07
CLK3-207ENST00000562389 NR2C1P13056 603 aa14.63□□□□□ -0.07
CLK3-207ENST00000562389 RPL4P36578 427 aaKnown RBP14.63□□□□□ -0.07
CLK3-207ENST00000562389 GSSP48637 474 aa14.63□□□□□ -0.07
CLK3-207ENST00000562389 ZNF133P52736 654 aaPredicted RBP14.63□□□□□ -0.07
CLK3-207ENST00000562389 FXYD6P3P58550 94 aa14.63□□□□□ -0.07
CLK3-207ENST00000562389 TSPAN31Q12999 210 aa14.63□□□□□ -0.07
CLK3-207ENST00000562389 LRFN4Q6PJG9 635 aa14.63□□□□□ -0.07
CLK3-207ENST00000562389 PAPD5Q8NDF8 572 aaKnown RBP14.63□□□□□ -0.07
CLK3-207ENST00000562389 ZNF519Q8TB69 540 aa14.63□□□□□ -0.07
CLK3-207ENST00000562389 GNPDA2Q8TDQ7 276 aa14.63□□□□□ -0.07
CLK3-207ENST00000562389 HDAC2Q92769 488 aaKnown RBP14.63□□□□□ -0.07
CLK3-207ENST00000562389 KCNK17Q96T54 332 aa14.63□□□□□ -0.07
CLK3-207ENST00000562389 FOXB1Q99853 325 aa14.63□□□□□ -0.07
CLK3-207ENST00000562389 TMEM204Q9BSN7 226 aa14.63□□□□□ -0.07
CLK3-207ENST00000562389 ALG12Q9BV10 488 aa14.63□□□□□ -0.07
CLK3-207ENST00000562389 KATNB1Q9BVA0 655 aa14.63□□□□□ -0.07
CLK3-207ENST00000562389 YY1AP1Q9H869 796 aa14.63□□□□□ -0.07
CLK3-207ENST00000562389 CCM2LQ9NUG4 571 aaPredicted RBP14.63□□□□□ -0.07
CLK3-207ENST00000562389 POFUT2Q9Y2G5 429 aa14.63□□□□□ -0.07
CLK3-207ENST00000562389 A0A096LPE4 126 aa14.62□□□□□ -0.07
CLK3-207ENST00000562389 A0A1W2PPZ6 126 aa14.62□□□□□ -0.07
CLK3-207ENST00000562389 A6NIZ1 184 aa14.62□□□□□ -0.07
CLK3-207ENST00000562389 FKBP6O75344 327 aa14.62□□□□□ -0.07
CLK3-207ENST00000562389 QDPRP09417 244 aa14.62□□□□□ -0.07
CLK3-207ENST00000562389 ACVR1BP36896 505 aa14.62□□□□□ -0.07
CLK3-207ENST00000562389 UBE2NP61088 152 aaKnown RBP14.62□□□□□ -0.07
CLK3-207ENST00000562389 RAP1BP61224 184 aa14.62□□□□□ -0.07
CLK3-207ENST00000562389 RAP1AP62834 184 aa14.62□□□□□ -0.07
CLK3-207ENST00000562389 ERVK-25P63136 954 aa14.62□□□□□ -0.07
CLK3-207ENST00000562389 BSPH1Q075Z2 132 aa14.62□□□□□ -0.07
CLK3-207ENST00000562389 MICAQ29983 383 aa14.62□□□□□ -0.07
CLK3-207ENST00000562389 C1orf146Q5VVC0 180 aa14.62□□□□□ -0.07
CLK3-207ENST00000562389 ZNF770Q6IQ21 691 aaPredicted RBP14.62□□□□□ -0.07
CLK3-207ENST00000562389 SMARCD3Q6STE5 483 aa14.62□□□□□ -0.07
CLK3-207ENST00000562389 KLHL17Q6TDP4 642 aa14.62□□□□□ -0.07
CLK3-207ENST00000562389 THSD4Q6ZMP0 1018 aa14.62□□□□□ -0.07
CLK3-207ENST00000562389 FAM122BQ7Z309 247 aa14.62□□□□□ -0.07
CLK3-207ENST00000562389 CCDC36Q8IYA8 594 aa14.62□□□□□ -0.07
CLK3-207ENST00000562389 OR9Q2Q8NGE9 314 aa14.62□□□□□ -0.07
CLK3-207ENST00000562389 FANK1Q8TC84 345 aa14.62□□□□□ -0.07
CLK3-207ENST00000562389 MCHR2Q969V1 340 aa14.62□□□□□ -0.07
CLK3-207ENST00000562389 SLCO4A1Q96BD0 722 aa14.62□□□□□ -0.07
CLK3-207ENST00000562389 NMD3Q96D46 503 aaKnown RBP14.62□□□□□ -0.07
CLK3-207ENST00000562389 NRIP3Q9NQ35 241 aa14.62□□□□□ -0.07
CLK3-207ENST00000562389 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.62□□□□□ -0.07
CLK3-207ENST00000562389 U3KQV3 271 aa14.62□□□□□ -0.07
CLK3-207ENST00000562389 DCHS2Q6V1P9 2916 aa14.62□□□□□ -0.07
CLK3-207ENST00000562389 CENPEQ02224 2701 aa14.61□□□□□ -0.07
CLK3-207ENST00000562389 DPRXA6NFQ7 191 aa14.61□□□□□ -0.07
CLK3-207ENST00000562389 DHHO43323 396 aa14.61□□□□□ -0.07
CLK3-207ENST00000562389 SEC14L2O76054 403 aa14.61□□□□□ -0.07
CLK3-207ENST00000562389 CD3EP07766 207 aa14.61□□□□□ -0.07
CLK3-207ENST00000562389 PPP1R8Q12972 351 aaKnown RBP14.61□□□□□ -0.07
CLK3-207ENST00000562389 C10orf128Q5T292 105 aa14.61□□□□□ -0.07
CLK3-207ENST00000562389 TMEM108Q6UXF1 575 aa14.61□□□□□ -0.07
CLK3-207ENST00000562389 ZNF813Q6ZN06 617 aa14.61□□□□□ -0.07
CLK3-207ENST00000562389 DPY19L2P2Q6ZN68 376 aa14.61□□□□□ -0.07
CLK3-207ENST00000562389 ZNF704Q6ZNC4 412 aaPredicted RBP14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms