RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 GPR32P1Q8NGA4 272 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 TRUB1Q8WWH5 349 aaKnown RBP8.36□□□□□ -1.07
VPS39-205ENST00000562258 ITFG2Q969R8 447 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 BORCS8Q96FH0 119 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 ABHD17AQ96GS6 310 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 SLC25A18Q9H1K4 315 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 C20orf141Q9NUB4 165 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 PLEKHA6Q9Y2H5 1048 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 TSC22D4Q9Y3Q8 395 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 LOC102725191A0A1B0GVB3 256 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 FAM25EA8MYX2 175 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 M0R1B8 84 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 CRYAAP02489 173 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 PATE4P0C8F1 98 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 FPR3P25089 353 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 CDAP32320 146 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 TAS2R43P59537 309 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 ACTA2P62736 377 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 ACTG2P63267 376 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 ARSJQ5FYB0 599 aaPredicted RBP8.36□□□□□ -1.07
VPS39-205ENST00000562258 ESPNLQ6ZVH7 1005 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 PRR18Q8N4B5 295 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 C3orf49Q96BT1 292 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 ACTR6Q9GZN1 396 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 SP140LQ9H930 580 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 B3GALT5Q9Y2C3 310 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 ABCA2Q9BZC7 2435 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.36□□□□□ -1.07
VPS39-205ENST00000562258 METTL21EPA6NDL7 271 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 FABP12A6NFH5 140 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 ANKUB1A6NFN9 424 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 ANKRD30BLA7E2S9 258 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 CCL21O00585 134 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 GUSBP08236 651 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 GADD45AP24522 165 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 SDC2P34741 201 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 SRSF6Q13247 344 aaKnown RBP8.36□□□□□ -1.07
VPS39-205ENST00000562258 KCTD21Q4G0X4 260 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 ZNF773Q6PK81 442 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 DPY19L2P2Q6ZN68 376 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 SHISA5Q8N114 240 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 ZNF721Q8TF20 911 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 RFT1Q96AA3 541 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 ZNF442Q9H7R0 627 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 UFSP2Q9NUQ7 469 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 OR14J1Q9UGF5 321 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 CES1P1Q9UKY3 287 aa8.36□□□□□ -1.07
VPS39-205ENST00000562258 TICRRQ7Z2Z1 1910 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 A0A087WUJ7 227 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 HTR3BO95264 441 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 SLC2A5P22732 501 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 SPOCK1Q08629 439 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 SEC23BQ15437 767 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 GLT8D1Q68CQ7 371 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 HEPHL1Q6MZM0 1159 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 FIP1L1Q6UN15 594 aaKnown RBP8.35□□□□□ -1.07
VPS39-205ENST00000562258 PPP1R32Q7Z5V6 425 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 ARIH2OSQ8N7S6 290 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 TMEM163Q8TC26 289 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 KISS1RQ969F8 398 aaPredicted RBP8.35□□□□□ -1.07
VPS39-205ENST00000562258 OR10A2Q9H208 303 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 MMP25Q9NPA2 562 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 AK6Q9Y3D8 172 aaKnown RBP8.35□□□□□ -1.07
VPS39-205ENST00000562258 ATP23Q9Y6H3 246 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 TANC1Q9C0D5 1861 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 OIP5O43482 229 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 PRKYO43930 277 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 SELENOFO60613 162 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 ECDO95905 644 aaPredicted RBP8.35□□□□□ -1.07
VPS39-205ENST00000562258 ITGB2P05107 769 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 MAPK3P27361 379 aaPredicted RBP8.35□□□□□ -1.07
VPS39-205ENST00000562258 LAP3P28838 519 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 PSPHP78330 225 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 SLC22A6Q4U2R8 563 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 PAMR1Q6UXH9 720 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 OR5T2Q8NGG2 359 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 TAAR8Q969N4 342 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 ZBTB8AQ96BR9 441 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 ZNF701Q9NV72 531 aaPredicted RBP8.35□□□□□ -1.07
VPS39-205ENST00000562258 GLS2Q9UI32 602 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 HDGFL3Q9Y3E1 203 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 IGHV1-45A0A0A0MS14 117 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 ZNF16P17020 682 aaPredicted RBP8.35□□□□□ -1.07
VPS39-205ENST00000562258 SRD5A2P31213 254 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 MLF1P58340 268 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 MVKQ03426 396 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 HNRNPA0Q13151 305 aaKnown RBP8.35□□□□□ -1.07
VPS39-205ENST00000562258 ZNF169Q14929 603 aaPredicted RBP8.35□□□□□ -1.07
VPS39-205ENST00000562258 EIF2S3LQ2VIR3 472 aaKnown RBP8.35□□□□□ -1.07
VPS39-205ENST00000562258 SPATA46Q5T0L3 261 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 DEFB108BQ8NET1 73 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 IL17RDQ8NFM7 739 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 OR2M7Q8NG81 312 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 AKR7LQ8NHP1 331 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 CPNE4Q96A23 557 aaPredicted RBP8.35□□□□□ -1.07
VPS39-205ENST00000562258 HINT3Q9NQE9 182 aaKnown RBP8.35□□□□□ -1.07
VPS39-205ENST00000562258 DNAJB12Q9NXW2 375 aaKnown RBP8.35□□□□□ -1.07
VPS39-205ENST00000562258 B3GNT3Q9Y2A9 372 aa8.35□□□□□ -1.07
VPS39-205ENST00000562258 FAM240BA0A1B0GVZ2 78 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 H3BNX3 289 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms