RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ZNF322Q6U7Q0 402 aaPredicted RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 FAM57BQ71RH2 274 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 TSPYL5Q86VY4 417 aaPredicted RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 OR2V1Q8NHB1 315 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 AKR7LQ8NHP1 331 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 ADIPOR1Q96A54 375 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 RFT1Q96AA3 541 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 GPA33Q99795 319 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 SH3GL3Q99963 347 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 CHST11Q9NPF2 352 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 TRIM36Q9NQ86 728 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 PRDM4Q9UKN5 801 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 FZR1Q9UM11 496 aa4.91□□□□□ -1.62
VPS13C-209ENST00000560637 RBM7Q9Y580 266 aaKnown RBP4.91□□□□□ -1.62
VPS13C-209ENST00000560637 PKD1L2Q7Z442 2459 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 A0A0B4J2E0 115 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 A0A1B0GX12 115 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 GGT3PA6NGU5 568 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 TBX19O60806 448 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 CDRT1O95170 752 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 RAB36O95755 333 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 MT-ND5P03915 603 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 IGKV3-11P04433 115 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 LAP3P28838 519 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 RIDAP52758 137 aaKnown RBP4.9□□□□□ -1.62
VPS13C-209ENST00000560637 TMPRSS3P57727 454 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 C19orf57Q0VDD7 668 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 TAB1Q15750 504 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 TIMM50Q3ZCQ8 353 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 METAP1DQ6UB28 335 aaPredicted RBP4.9□□□□□ -1.62
VPS13C-209ENST00000560637 WDR88Q6ZMY6 472 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 ZNF620Q6ZNG0 422 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 KRT74Q7RTS7 529 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 KANSL1Q7Z3B3 1105 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 GPR155Q7Z3F1 870 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 TUSC5Q8IXB3 177 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 SLC35F2Q8IXU6 374 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 SETD6Q8TBK2 473 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 SPRYD4Q8WW59 207 aaPredicted RBP4.9□□□□□ -1.62
VPS13C-209ENST00000560637 NR4A3Q92570 626 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 TFAP2CQ92754 450 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 MUCL1Q96DR8 90 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 FCRL1Q96LA6 429 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 ZNF552Q9H707 407 aaPredicted RBP4.9□□□□□ -1.62
VPS13C-209ENST00000560637 ELOVL3Q9HB03 270 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 POLE3Q9NRF9 147 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 ABCB10Q9NRK6 738 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 NKIRAS2Q9NYR9 191 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 EMC3Q9P0I2 261 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 KLHL9Q9P2J3 617 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 MGAQ8IWI9 3026 aa4.9□□□□□ -1.62
VPS13C-209ENST00000560637 OBSL1O75147 1896 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 LOC100509620A0A075B734 347 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 A0A0J9YW62 118 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 TMEM269A0A1B0GVZ9 245 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 A0A1W2PPW3 197 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 ANKUB1A6NFN9 424 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 DPM1O60762 260 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 ADAM11O75078 769 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 SERPINA3P01011 423 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 HLA-HP01893 362 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 TACSTD2P09758 323 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 WT1P19544 449 aaPredicted RBP4.9□□□□□ -1.63
VPS13C-209ENST00000560637 CNR1P21554 472 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 CAV3P56539 151 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 CLPPQ16740 277 aaPredicted RBP4.9□□□□□ -1.63
VPS13C-209ENST00000560637 RASSF6Q6ZTQ3 369 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 NCCRP1Q6ZVX7 275 aaPredicted RBP4.9□□□□□ -1.63
VPS13C-209ENST00000560637 BTN2A1Q7KYR7 527 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 DCXRQ7Z4W1 244 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 CEACAM19Q7Z692 300 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 GID4Q8IVV7 300 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 CMIPQ8IY22 773 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 ENTHD1Q8IYW4 607 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 CHDHQ8NE62 594 aaPredicted RBP4.9□□□□□ -1.63
VPS13C-209ENST00000560637 PSMA8Q8TAA3 256 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 FAM46BQ96A09 425 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 MIB2Q96AX9 1013 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 MRGPRX4Q96LA9 322 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 SPACA5Q96QH8 159 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 MRPS26Q9BYN8 205 aaKnown RBP4.9□□□□□ -1.63
VPS13C-209ENST00000560637 MEPEQ9NQ76 525 aaPredicted RBP4.9□□□□□ -1.63
VPS13C-209ENST00000560637 TINAGQ9UJW2 476 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 CORINQ9Y5Q5 1042 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 ANKHD1Q8IWZ3 2542 aaKnown RBP4.9□□□□□ -1.63
VPS13C-209ENST00000560637 ACOD1A6NK06 481 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF587BE7ETH6 402 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 PRODHO43272 600 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 PRSS23O95084 383 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 ABHD16AO95870 558 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 NR2C1P13056 603 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 FPR3P25089 353 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 DCKP27707 260 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 CRABP1P29762 137 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 SELENOPP49908 381 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 FABP6P51161 128 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 CAPZA1P52907 286 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 CLN3Q13286 438 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 SKP2Q13309 424 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 ZSWIM7Q19AV6 140 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms