RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 DNMT3BQ9UBC3 853 aaKnown RBP6.55□□□□□ -1.36
USP3-210ENST00000559192 STEAP1Q9UHE8 339 aa6.55□□□□□ -1.36
USP3-210ENST00000559192 POMT2Q9UKY4 750 aa6.55□□□□□ -1.36
USP3-210ENST00000559192 LSM2Q9Y333 95 aaKnown RBP6.55□□□□□ -1.36
USP3-210ENST00000559192 NPFFR2Q9Y5X5 522 aa6.55□□□□□ -1.36
USP3-210ENST00000559192 MEIKINA0A087WXM9 373 aa6.55□□□□□ -1.36
USP3-210ENST00000559192 EPXP11678 715 aa6.55□□□□□ -1.36
USP3-210ENST00000559192 P2RY2P41231 377 aa6.55□□□□□ -1.36
USP3-210ENST00000559192 MMP15P51511 669 aa6.55□□□□□ -1.36
USP3-210ENST00000559192 MAP2K6P52564 334 aa6.55□□□□□ -1.36
USP3-210ENST00000559192 PCBP3P57721 371 aaKnown RBP6.55□□□□□ -1.36
USP3-210ENST00000559192 TAS2R20P59543 309 aa6.55□□□□□ -1.36
USP3-210ENST00000559192 PPA1Q15181 289 aa6.55□□□□□ -1.36
USP3-210ENST00000559192 TMEM201Q5SNT2 666 aa6.55□□□□□ -1.36
USP3-210ENST00000559192 SLC6A19Q695T7 634 aa6.55□□□□□ -1.36
USP3-210ENST00000559192 TMEM81Q6P7N7 255 aa6.55□□□□□ -1.36
USP3-210ENST00000559192 DNM1P34Q6PK57 102 aa6.55□□□□□ -1.36
USP3-210ENST00000559192 SLC29A4Q7RTT9 530 aa6.55□□□□□ -1.36
USP3-210ENST00000559192 GPAT4Q86UL3 456 aa6.55□□□□□ -1.36
USP3-210ENST00000559192 CDH26Q8IXH8 852 aa6.55□□□□□ -1.36
USP3-210ENST00000559192 VN1R2Q8NFZ6 395 aa6.55□□□□□ -1.36
USP3-210ENST00000559192 OR10R2Q8NGX6 335 aa6.55□□□□□ -1.36
USP3-210ENST00000559192 MS4A6EQ96DS6 147 aa6.55□□□□□ -1.36
USP3-210ENST00000559192 MRI1Q9BV20 369 aa6.55□□□□□ -1.36
USP3-210ENST00000559192 SUCNR1Q9BXA5 334 aa6.55□□□□□ -1.36
USP3-210ENST00000559192 APMAPQ9HDC9 416 aa6.55□□□□□ -1.36
USP3-210ENST00000559192 NPIPA2E9PIF3 369 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 NPIPA3F8WFD2 350 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 PHYHO14832 338 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 CSF2RAP15509 400 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 ATF1P18846 271 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 CLINT1Q14677 625 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 COL13A1Q5TAT6 717 aaPredicted RBP6.54□□□□□ -1.36
USP3-210ENST00000559192 ASTLQ6HA08 431 aaPredicted RBP6.54□□□□□ -1.36
USP3-210ENST00000559192 Q6ZNB5 142 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 MCEMP1Q8IX19 187 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 ZNF679Q8IYX0 411 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 ZNF687Q8N1G0 1237 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 LILRB2Q8N423 598 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 PLPP5Q8NEB5 264 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 ELP5Q8TE02 316 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 NPRL2Q8WTW4 380 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 RSC1A1Q92681 617 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 NKX3-1Q99801 234 aaPredicted RBP6.54□□□□□ -1.36
USP3-210ENST00000559192 ZFYVE21Q9BQ24 234 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 MYO10Q9HD67 2058 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 TCRBV16S1A1N1A0A5B0 115 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 MAN2B1O00754 1011 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 CLN5O75503 358 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 METAP1P53582 386 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 CLRN1P58418 232 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 C1orf61Q13536 156 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 DEFB115Q30KQ5 88 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 HNRNPA1L2Q32P51 320 aaKnown RBP6.54□□□□□ -1.36
USP3-210ENST00000559192 BAGE3Q86Y29 109 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 BAGE2Q86Y30 109 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 ADGRG3Q86Y34 549 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 DEFB119Q8N690 84 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 C17orf47Q8NEP4 570 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 OR4D6Q8NGJ1 314 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 THAP3Q8WTV1 239 aaPredicted RBP6.54□□□□□ -1.36
USP3-210ENST00000559192 CMC2Q9NRP2 79 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 LUZP4Q9P127 313 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 WASF3Q9UPY6 502 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 A0A1B0GUH1 482 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 TLX3O43711 291 aaPredicted RBP6.54□□□□□ -1.36
USP3-210ENST00000559192 GPRIN2O60269 458 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 SLC6A1P30531 599 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 P2RX1P51575 399 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 ALKBH1Q13686 389 aaKnown RBP6.54□□□□□ -1.36
USP3-210ENST00000559192 LGALSLQ3ZCW2 172 aaPredicted RBP6.54□□□□□ -1.36
USP3-210ENST00000559192 C12orf40Q86WS4 652 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 ZNF561Q8N587 486 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 SLC30A7Q8NEW0 376 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 OR5H2Q8NGV7 314 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 FBXW5Q969U6 566 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 ZG16BQ96DA0 208 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 SLC17A9Q9BYT1 436 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 ZFP57Q9NU63 452 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 GMEB2Q9UKD1 530 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 TSPAN11A1L157 253 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 FBXO24O75426 580 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 GCM2O75603 506 aaPredicted RBP6.54□□□□□ -1.36
USP3-210ENST00000559192 MGST1P10620 155 aaKnown RBP6.54□□□□□ -1.36
USP3-210ENST00000559192 POU3F4P49335 361 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 CSNK2A1P68400 391 aaPredicted RBP6.54□□□□□ -1.36
USP3-210ENST00000559192 BDH1Q02338 343 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 GUCA2AQ02747 115 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 GPR18Q14330 331 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 GPNMBQ14956 572 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 OR10K2Q6IF99 312 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 TMEM65Q6PI78 240 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 NAA40Q86UY6 237 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 CSNK2A3Q8NEV1 391 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 NXPE3Q969Y0 559 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 RAB3CQ96E17 227 aa6.54□□□□□ -1.36
USP3-210ENST00000559192 BSCL2Q96G97 398 aaPredicted RBP6.54□□□□□ -1.36
USP3-210ENST00000559192 A0A0A6YYC8 382 aaPredicted RBP6.53□□□□□ -1.36
USP3-210ENST00000559192 SERTM1A2A2V5 107 aa6.53□□□□□ -1.36
USP3-210ENST00000559192 GGT3PA6NGU5 568 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms