RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 KDM8Q8N371 416 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 ZNF676Q8N7Q3 588 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 UXS1Q8NBZ7 420 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 OR2G2Q8NGZ5 317 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 NSMAFQ92636 917 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 CCDC74AQ96AQ1 378 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 PIPOXQ9P0Z9 390 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 MYEF2Q9P2K5 600 aaKnown RBP11.68□□□□□ -0.54
LDLR-207ENST00000558013 MGAT4CQ9UBM8 478 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 THADAQ6YHU6 1953 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 OR4C45A6NMZ5 311 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 ZNF264O43296 627 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 HCRTR2O43614 444 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 ITGA10O75578 1167 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 NSA2O95478 260 aaKnown RBP11.68□□□□□ -0.54
LDLR-207ENST00000558013 NUDT14O95848 222 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 CAPZA2P47755 286 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 ART1P52961 327 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 TSPAN5P62079 268 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 MRPS21P82921 87 aaKnown RBP11.68□□□□□ -0.54
LDLR-207ENST00000558013 MEP1BQ16820 701 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 TCTE1Q5JU00 501 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 FAM198BQ6UWH4 519 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 SEZ6L2Q6UXD5 910 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 FGD2Q7Z6J4 655 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 HAVCR1Q96D42 359 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 NXPE2Q96DL1 559 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 GPX7Q96SL4 187 aaPredicted RBP11.68□□□□□ -0.54
LDLR-207ENST00000558013 MFRPQ9BY79 579 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 SCP2D1Q9UJQ7 156 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 MED12Q93074 2177 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 RPS10-NUDT3A0A1W2PQS6 291 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 ANKRD20A5PA0PJZ0 165 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 OR5K4A6NMS3 321 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 TEX46H3BTG2 121 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 PYCARD-AS1I3L0S3 204 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 SCDO00767 359 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 HLA-DQA2P01906 255 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 POU3F2P20265 443 aaPredicted RBP11.67□□□□□ -0.54
LDLR-207ENST00000558013 LTBRP36941 435 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 ZNF117Q03924 483 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 ZP2Q05996 745 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 SQSTM1Q13501 440 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.67□□□□□ -0.54
LDLR-207ENST00000558013 FAM220AQ7Z4H9 259 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 BPHLQ86WA6 291 aaPredicted RBP11.67□□□□□ -0.54
LDLR-207ENST00000558013 CDC20BQ86Y33 519 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 FAM71CQ8NEG0 241 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 DVL3Q92997 716 aaPredicted RBP11.67□□□□□ -0.54
LDLR-207ENST00000558013 GLTPQ9NZD2 209 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 MMP17Q9ULZ9 603 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 FREM3P0C091 2139 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 I3L521 148 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 PDCD5O14737 125 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 ALOX5APP20292 161 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 KIR3DL2P43630 455 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 GABRA4P48169 554 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 CCINQ13939 588 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 KIAA0895LQ68EN5 471 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 OR5M10Q6IEU7 315 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 C16orf47Q6ZP98 133 aaPredicted RBP11.67□□□□□ -0.54
LDLR-207ENST00000558013 CCDC28AQ8IWP9 274 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 SLC38A6Q8IZM9 456 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 LRFN5Q96NI6 719 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 CELSR3Q9NYQ7 3312 aa11.67□□□□□ -0.54
LDLR-207ENST00000558013 ANXA2P2A6NMY6 339 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 SRPX2O60687 465 aaPredicted RBP11.66□□□□□ -0.54
LDLR-207ENST00000558013 PNPP00491 289 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 PROS1P07225 676 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 ANXA2P07355 339 aaKnown RBP11.66□□□□□ -0.54
LDLR-207ENST00000558013 MYF5P13349 255 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 CXCL2P19875 107 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 LCN1P31025 176 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 HSF2Q03933 536 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 DEFB133Q30KQ1 61 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 VWA2Q5GFL6 755 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 SFRP5Q5T4F7 317 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 GPR139Q6DWJ6 353 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 ASPHD2Q6ICH7 369 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 MIB2Q96AX9 1013 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 KLHDC7BQ96G42 594 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 PLEKHA1Q9HB21 404 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 NPDC1Q9NQX5 325 aaPredicted RBP11.66□□□□□ -0.54
LDLR-207ENST00000558013 MPZL1O95297 269 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 CD1AP06126 327 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 ITGA5P08648 1049 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 VSIG10L2P0DP72 767 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 CAPZBP47756 277 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 PSMD4P55036 377 aaKnown RBP11.66□□□□□ -0.54
LDLR-207ENST00000558013 RAG2P55895 527 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 IL10RAQ13651 578 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 WDR38Q5JTN6 314 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 SIGIRRQ6IA17 410 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 SHISA6Q6ZSJ9 500 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 CHMP1BQ7LBR1 199 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 SLC43A2Q8N370 569 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 PLPP7Q8NBV4 271 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 OR8S1Q8NH09 359 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 LMX1AQ8TE12 382 aa11.66□□□□□ -0.54
LDLR-207ENST00000558013 NPAS1Q99742 590 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms