RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 CABIN1Q9Y6J0 2220 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 AKR7A3O95154 331 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 WNT11O96014 354 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 CSTAP01040 98 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 HIST1H2ABP04908 130 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 DIO1P49895 249 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 RAP2BP61225 183 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 ACTA2P62736 377 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 ACTG2P63267 376 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 GPR18Q14330 331 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 ZNF169Q14929 603 aaPredicted RBP11.22□□□□□ -0.61
LDLR-205ENST00000557933 TRAM1Q15629 374 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 ARHGAP40Q5TG30 622 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 FIGLAQ6QHK4 219 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 TSSK4Q6SA08 328 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 HIST3H2AQ7L7L0 130 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 OVCH1Q7RTY7 1134 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 CBLN2Q8IUK8 224 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 ZFP82Q8N141 532 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 GALNT16Q8N428 558 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 RCBTB1Q8NDN9 531 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 C2CD4CQ8TF44 421 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 NSMAFQ92636 917 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 HIST1H2ACQ93077 130 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 AIFM2Q9BRQ8 373 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 ZNF471Q9BX82 626 aaPredicted RBP11.22□□□□□ -0.61
LDLR-205ENST00000557933 ATG5Q9H1Y0 275 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 GPN1Q9HCN4 374 aaPredicted RBP11.22□□□□□ -0.61
LDLR-205ENST00000557933 INPP5EQ9NRR6 644 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 CDV3Q9UKY7 258 aaKnown RBP11.22□□□□□ -0.61
LDLR-205ENST00000557933 ATXN7L1Q9ULK2 861 aaPredicted RBP11.22□□□□□ -0.61
LDLR-205ENST00000557933 SLC22A7Q9Y694 548 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 A0A0A6YYC8 382 aaPredicted RBP11.22□□□□□ -0.61
LDLR-205ENST00000557933 I3L1I5 382 aaPredicted RBP11.22□□□□□ -0.61
LDLR-205ENST00000557933 GSTZ1O43708 216 aaPredicted RBP11.22□□□□□ -0.61
LDLR-205ENST00000557933 CELA2BP08218 269 aaPredicted RBP11.22□□□□□ -0.61
LDLR-205ENST00000557933 RGS19P49795 217 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 CTXN1P60606 82 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 PRICKLE4Q2TBC4 344 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 OR6V1Q8N148 313 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 CDRT4Q8N9R6 151 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 OR1J2Q8NGS2 313 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 ASB12Q8WXK4 309 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 HAVCR1Q96D42 359 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 CMBLQ96DG6 245 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 PDCD10Q9BUL8 212 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.22□□□□□ -0.61
LDLR-205ENST00000557933 TCEAL2Q9H3H9 227 aaPredicted RBP11.22□□□□□ -0.61
LDLR-205ENST00000557933 SFXN1Q9H9B4 322 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 KCNG2Q9UJ96 466 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 ENTPD2Q9Y5L3 495 aa11.22□□□□□ -0.61
LDLR-205ENST00000557933 PRRC2CQ9Y520 2896 aaKnown RBP11.21□□□□□ -0.61
LDLR-205ENST00000557933 ACOT7O00154 380 aa11.21□□□□□ -0.61
LDLR-205ENST00000557933 APBB3O95704 486 aa11.21□□□□□ -0.61
LDLR-205ENST00000557933 THBS1P07996 1170 aa11.21□□□□□ -0.61
LDLR-205ENST00000557933 MAOAP21397 527 aa11.21□□□□□ -0.61
LDLR-205ENST00000557933 MAOBP27338 520 aa11.21□□□□□ -0.61
LDLR-205ENST00000557933 GJA4P35212 333 aa11.21□□□□□ -0.61
LDLR-205ENST00000557933 FOXL2P58012 376 aa11.21□□□□□ -0.61
LDLR-205ENST00000557933 AP3S2P59780 193 aa11.21□□□□□ -0.61
LDLR-205ENST00000557933 C1orf61Q13536 156 aa11.21□□□□□ -0.61
LDLR-205ENST00000557933 FHL5Q5TD97 284 aa11.21□□□□□ -0.61
LDLR-205ENST00000557933 FAM109BQ6ICB4 259 aaPredicted RBP11.21□□□□□ -0.61
LDLR-205ENST00000557933 RNF113BQ8IZP6 322 aaKnown RBP11.21□□□□□ -0.61
LDLR-205ENST00000557933 TMEM185AQ8NFB2 350 aa11.21□□□□□ -0.61
LDLR-205ENST00000557933 OR14A16Q8NHC5 309 aa11.21□□□□□ -0.61
LDLR-205ENST00000557933 WFIKKN2Q8TEU8 576 aa11.21□□□□□ -0.61
LDLR-205ENST00000557933 SCARB1Q8WTV0 552 aa11.21□□□□□ -0.61
LDLR-205ENST00000557933 MRPL38Q96DV4 380 aaKnown RBP11.21□□□□□ -0.61
LDLR-205ENST00000557933 CPNE2Q96FN4 548 aaPredicted RBP11.21□□□□□ -0.61
LDLR-205ENST00000557933 ZNF764Q96H86 408 aaPredicted RBP11.21□□□□□ -0.61
LDLR-205ENST00000557933 GAS2L1Q99501 681 aaPredicted RBP11.21□□□□□ -0.61
LDLR-205ENST00000557933 SLC7A5P2Q9GIP4 190 aa11.21□□□□□ -0.61
LDLR-205ENST00000557933 IGFLR1Q9H665 355 aa11.21□□□□□ -0.61
LDLR-205ENST00000557933 PTTG3PQ9NZH4 202 aa11.21□□□□□ -0.61
LDLR-205ENST00000557933 KIF25Q9UIL4 384 aa11.21□□□□□ -0.61
LDLR-205ENST00000557933 TGFBR3LH3BV60 316 aa11.21□□□□□ -0.62
LDLR-205ENST00000557933 ITGA10O75578 1167 aa11.21□□□□□ -0.62
LDLR-205ENST00000557933 DLX5P56178 289 aa11.21□□□□□ -0.62
LDLR-205ENST00000557933 MC2RQ01718 297 aa11.21□□□□□ -0.62
LDLR-205ENST00000557933 ZNF546Q86UE3 836 aa11.21□□□□□ -0.62
LDLR-205ENST00000557933 JAZF1Q86VZ6 243 aa11.21□□□□□ -0.62
LDLR-205ENST00000557933 SLC25A36Q96CQ1 311 aa11.21□□□□□ -0.62
LDLR-205ENST00000557933 APOOQ9BUR5 198 aa11.21□□□□□ -0.62
LDLR-205ENST00000557933 NRSN2Q9GZP1 204 aa11.21□□□□□ -0.62
LDLR-205ENST00000557933 MKKSQ9NPJ1 570 aaPredicted RBP11.21□□□□□ -0.62
LDLR-205ENST00000557933 OBP2AQ9NY56 170 aa11.21□□□□□ -0.62
LDLR-205ENST00000557933 MED11Q9P086 117 aa11.21□□□□□ -0.62
LDLR-205ENST00000557933 SLC27A6Q9Y2P4 619 aa11.21□□□□□ -0.62
LDLR-205ENST00000557933 C2orf16Q68DN1 1984 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 PRSS38A1L453 326 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 IFNA16P05015 189 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 STARP49675 285 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 CEBPEQ15744 281 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 LINC01590Q5TEZ4 76 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 BPIFCQ8NFQ6 507 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 OR51A2Q8NGJ7 313 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 FAM60AQ9NP50 221 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 LAMP5Q9UJQ1 280 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 PILRAQ9UKJ1 303 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms