RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 CFTRP13569 1480 aa2.43□□□□□ -2.02
TRAV28-201ENST00000557548 ARAP1Q96P48 1450 aa2.43□□□□□ -2.02
TRAV28-201ENST00000557548 FANCD2Q9BXW9 1451 aa2.43□□□□□ -2.02
TRAV28-201ENST00000557548 CEP164Q9UPV0 1460 aa2.43□□□□□ -2.02
TRAV28-201ENST00000557548 PPRC1Q5VV67 1664 aaKnown RBP2.43□□□□□ -2.02
TRAV28-201ENST00000557548 CLASP1Q7Z460 1538 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 USP47Q96K76 1375 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 IGLV3-22A0A075B6J6 115 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 IGHV1OR21-1A0A087WYE8 117 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 IGHV3-35A0A0C4DH35 117 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 A0A0G2JRQ6 117 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 A0A1B0GU03 582 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 A0A1B0GUH1 482 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 TRPC5OSA6NMA1 111 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 HDAC3O15379 428 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 GPAA1O43292 621 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 CALUO43852 315 aaPredicted RBP2.42□□□□□ -2.02
TRAV28-201ENST00000557548 CHST1O43916 411 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 SOX15O60248 233 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 ATP5HO75947 161 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 ERLIN2O94905 339 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 OR5F1O95221 314 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 IGKV3-20P01619 116 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 KLK3P07288 261 aaPredicted RBP2.42□□□□□ -2.02
TRAV28-201ENST00000557548 RPSAP08865 295 aaKnown RBP2.42□□□□□ -2.02
TRAV28-201ENST00000557548 CCNOP22674 350 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 HOXA6P31267 233 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 NAA10P41227 235 aaPredicted RBP2.42□□□□□ -2.02
TRAV28-201ENST00000557548 SLC1A2P43004 574 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 CRATP43155 626 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 STX17P56962 302 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 FBXW4P57775 412 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 B2MP61769 119 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 TSPAN5P62079 268 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 TLE4Q04727 773 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 CD47Q08722 323 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 ASAH1Q13510 395 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 RCAN2Q14206 197 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 MAPRE2Q15555 327 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 SNCBQ16143 134 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 PARP15Q460N3 678 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 PAN3Q58A45 887 aaKnown RBP2.42□□□□□ -2.02
TRAV28-201ENST00000557548 BEX5Q5H9J7 111 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 PPM1LQ5SGD2 360 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 OR52W1Q6IF63 320 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 REEP3Q6NUK4 255 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 Q6ZN92 141 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 LRRC6Q86X45 466 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 STX12Q86Y82 276 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 MMAAQ8IVH4 418 aaKnown RBP2.42□□□□□ -2.02
TRAV28-201ENST00000557548 PRR22Q8IZ63 422 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 RDH10Q8IZV5 341 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 WDSUB1Q8N9V3 476 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 OR1S2Q8NGQ3 325 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 DTX3LQ8TDB6 740 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 C8orf44Q96CB5 159 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 FOXN4Q96NZ1 517 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 PSMB7Q99436 277 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 SORT1Q99523 831 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 VGLL1Q99990 258 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 NAT9Q9BTE0 207 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 MFFQ9GZY8 342 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 GAL3ST2Q9H3Q3 398 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 RANBP3Q9H6Z4 567 aaPredicted RBP2.42□□□□□ -2.02
TRAV28-201ENST00000557548 FGF20Q9NP95 211 aaPredicted RBP2.42□□□□□ -2.02
TRAV28-201ENST00000557548 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP2.42□□□□□ -2.02
TRAV28-201ENST00000557548 GIN1Q9NXP7 522 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 CLEC5AQ9NY25 188 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 SLC39A1Q9NY26 324 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 B4GALT7Q9UBV7 327 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 KLHL21Q9UJP4 597 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 MMP24Q9Y5R2 645 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 SHROOM2Q13796 1616 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 ABCA5Q8WWZ7 1642 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 TOPBP1Q92547 1522 aa2.42□□□□□ -2.02
TRAV28-201ENST00000557548 DNMBPQ6XZF7 1577 aa2.41□□□□□ -2.02
TRAV28-201ENST00000557548 IGHV1OR15-1A0A075B7D0 117 aa2.41□□□□□ -2.02
TRAV28-201ENST00000557548 A0A0J9YWU9 116 aa2.41□□□□□ -2.02
TRAV28-201ENST00000557548 GOLGA8QA0A0J9YX86 632 aa2.41□□□□□ -2.02
TRAV28-201ENST00000557548 A0A1W2PPR1 153 aa2.41□□□□□ -2.02
TRAV28-201ENST00000557548 TMEM120BA0PK00 339 aa2.41□□□□□ -2.02
TRAV28-201ENST00000557548 RBMY1BA6NDE4 496 aaKnown RBP2.41□□□□□ -2.02
TRAV28-201ENST00000557548 RBMY1EA6NEQ0 496 aaKnown RBP2.41□□□□□ -2.02
TRAV28-201ENST00000557548 K7N7A8 449 aa2.41□□□□□ -2.02
TRAV28-201ENST00000557548 SIRPB1O00241 398 aa2.41□□□□□ -2.02
TRAV28-201ENST00000557548 CCL21O00585 134 aa2.41□□□□□ -2.02
TRAV28-201ENST00000557548 BCKDKO14874 412 aa2.41□□□□□ -2.02
TRAV28-201ENST00000557548 PI15O43692 258 aa2.41□□□□□ -2.02
TRAV28-201ENST00000557548 AIREO43918 545 aa2.41□□□□□ -2.02
TRAV28-201ENST00000557548 HUS1O60921 280 aa2.41□□□□□ -2.02
TRAV28-201ENST00000557548 AHSA1O95433 338 aa2.41□□□□□ -2.02
TRAV28-201ENST00000557548 LCA5LO95447 670 aa2.41□□□□□ -2.02
TRAV28-201ENST00000557548 IGHV3-13P01766 116 aa2.41□□□□□ -2.02
TRAV28-201ENST00000557548 FGGP02679 453 aa2.41□□□□□ -2.02
TRAV28-201ENST00000557548 FGF1P05230 155 aa2.41□□□□□ -2.02
TRAV28-201ENST00000557548 C2P06681 752 aa2.41□□□□□ -2.02
TRAV28-201ENST00000557548 RBMY1DP0C7P1 496 aaKnown RBP2.41□□□□□ -2.02
TRAV28-201ENST00000557548 RBMY1A1P0DJD3 496 aaKnown RBP2.41□□□□□ -2.02
TRAV28-201ENST00000557548 MYL2P10916 166 aa2.41□□□□□ -2.02
TRAV28-201ENST00000557548 BCKDHBP21953 392 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms