RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 GRHL3Q8TE85 626 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 HS6ST2Q96MM7 605 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 PTCHD1Q96NR3 888 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 MMP17Q9ULZ9 603 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 ERVK-19Q9WJR5 959 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 ENTPD2Q9Y5L3 495 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 MYO15AQ9UKN7 3530 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 TRAV27A0A087WT01 109 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 SYNDIG1LA6NDD5 238 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 ANKRD61A6NGH8 418 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 F5H5P2 479 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 SULT1C2O00338 296 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 ATG12O94817 140 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 NDUFB6O95139 128 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 RLN2P04090 185 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 NGFRP08138 427 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 ZNF806P0C7X5 589 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 UBBP0CG47 229 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 UBCP0CG48 685 aaKnown RBP11.17□□□□□ -0.62
SHMT2-207ENST00000553837 CLUP10909 449 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 RPA2P15927 270 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 NOS3P29474 1203 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 ACVR1BP36896 505 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 RFC3P40938 356 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 RPS27AP62979 156 aaKnown RBP11.17□□□□□ -0.62
SHMT2-207ENST00000553837 UBA52P62987 128 aaKnown RBP11.17□□□□□ -0.62
SHMT2-207ENST00000553837 PSG6Q00889 435 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 FHL1Q13642 323 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 PGAP1Q75T13 922 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 OVCH1Q7RTY7 1134 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 C12orf45Q8N5I9 185 aaPredicted RBP11.17□□□□□ -0.62
SHMT2-207ENST00000553837 AVL9Q8NBF6 648 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 HOXB13Q92826 284 aaPredicted RBP11.17□□□□□ -0.62
SHMT2-207ENST00000553837 GHSRQ92847 366 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 BPIFA2Q96DR5 249 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 MOGAT1Q96PD6 335 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 CD180Q99467 661 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 PAPOLGQ9BWT3 736 aaKnown RBP11.17□□□□□ -0.62
SHMT2-207ENST00000553837 MFFQ9GZY8 342 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 ZNF768Q9H5H4 540 aaKnown RBP11.17□□□□□ -0.62
SHMT2-207ENST00000553837 CACYBPQ9HB71 228 aaKnown RBP11.17□□□□□ -0.62
SHMT2-207ENST00000553837 USP36Q9P275 1121 aaKnown RBP11.17□□□□□ -0.62
SHMT2-207ENST00000553837 FBXL4Q9UKA2 621 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 CYP8B1Q9UNU6 501 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 SIGLEC7Q9Y286 467 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 PCDHGA5Q9Y5G8 931 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 GON4LQ3T8J9 2241 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 VCANP13611 3396 aa11.17□□□□□ -0.62
SHMT2-207ENST00000553837 ANKRD20A5PA0PJZ0 165 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 J3QLW9 94 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 SIGLEC5O15389 551 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 EIF3GO75821 320 aaKnown RBP eCLIP11.16□□□□□ -0.62
SHMT2-207ENST00000553837 NKX2-2O95096 273 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 IGF2P01344 180 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 ACAA1P09110 424 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-207ENST00000553837 FBP1P09467 338 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 HPGDP15428 266 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 ZNF19P17023 458 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 PVALBP20472 110 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-207ENST00000553837 MST1P26927 711 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 MPGP29372 298 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 HOXA6P31267 233 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 RABIFP47224 123 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 ART1P52961 327 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 RAB38P57729 211 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 MRPS10P82664 201 aaKnown RBP11.16□□□□□ -0.62
SHMT2-207ENST00000553837 SIGLEC14Q08ET2 396 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 IL10RAQ13651 578 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 FAM53BQ14153 422 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 ERV3-1Q14264 604 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 RAB30Q15771 203 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 LINC00303Q3SY05 128 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 ZNF613Q6PF04 617 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 UQCC3Q6UW78 93 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 LNX2Q8N448 690 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 RELL2Q8NC24 303 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-207ENST00000553837 C17orf47Q8NEP4 570 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 NARS2Q96I59 477 aaKnown RBP11.16□□□□□ -0.62
SHMT2-207ENST00000553837 PGLYRP3Q96LB9 341 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 ORAI3Q9BRQ5 295 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 GINS4Q9BRT9 223 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 UFSP2Q9NUQ7 469 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 RASL12Q9NYN1 266 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 A0A0A6YYC8 382 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-207ENST00000553837 SPTY2D1-AS1A0A0U1RR47 76 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 ZNF729A6NN14 1252 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-207ENST00000553837 C2CD4DB7Z1M9 353 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 DISC1C4P0D8 188 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 PRAMEF26H0Y7S4 382 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 I3L1I5 382 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-207ENST00000553837 THEGLP0DJG4 465 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 MGMTP16455 207 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 SPI1P17947 270 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 ACAA2P42765 397 aaKnown RBP11.16□□□□□ -0.62
SHMT2-207ENST00000553837 PGDP52209 483 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 FOXK2Q01167 660 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 AMZ1Q400G9 498 aa11.16□□□□□ -0.62
SHMT2-207ENST00000553837 PAN3Q58A45 887 aaKnown RBP11.16□□□□□ -0.62
SHMT2-207ENST00000553837 DMKNQ6E0U4 476 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-207ENST00000553837 ZCCHC12Q6PEW1 402 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms