RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 SLC25A25Q6KCM7 469 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 TCTN3Q6NUS6 607 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 SLC30A6Q6NXT4 461 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 LRRN1Q6UXK5 716 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 SHISA6Q6ZSJ9 500 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 COX15Q7KZN9 410 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 KLBQ86Z14 1044 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 CSNK1A1LQ8N752 337 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 EXD3Q8N9H8 876 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 OR10K1Q8NGX5 313 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 OR51Q1Q8NH59 317 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 GLYATL2Q8WU03 294 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 APOBEC4Q8WW27 367 aaKnown RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 OR2A7Q96R45 310 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 CMSS1Q9BQ75 279 aaKnown RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 PTDSS2Q9BVG9 487 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 GPR87Q9BY21 358 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 KLHL31Q9H511 634 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 GPN1Q9HCN4 374 aaPredicted RBP6.98□□□□□ -1.29
LIMA1-216ENST00000552909 NANSQ9NR45 359 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 AHSPQ9NZD4 102 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 TCFL5Q9UL49 500 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 SRPK3Q9UPE1 567 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 GPR52Q9Y2T5 361 aa6.98□□□□□ -1.29
LIMA1-216ENST00000552909 NBASA2RRP1 2371 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 FXYD6-FXYD2A0A087WZ82 144 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 A0A1B0GX78 115 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 A0A1W2PRB8 838 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 LRIT2A6NDA9 550 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 KDM4EB2RXH2 506 aaPredicted RBP6.97□□□□□ -1.29
LIMA1-216ENST00000552909 C5orf58C9J3I9 102 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 SULT1C2O00338 296 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 ARPC1BO15143 372 aaKnown RBP6.97□□□□□ -1.29
LIMA1-216ENST00000552909 FOXS1O43638 330 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 GSTZ1O43708 216 aaPredicted RBP6.97□□□□□ -1.29
LIMA1-216ENST00000552909 CLEC3AO75596 197 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 CDC123O75794 336 aaPredicted RBP6.97□□□□□ -1.29
LIMA1-216ENST00000552909 KLHL18O94889 574 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 FAM87AP0C7U9 286 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 SPP1P10451 314 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 SHC1P29353 583 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 TIA1P31483 386 aaKnown RBP eCLIP6.97□□□□□ -1.29
LIMA1-216ENST00000552909 RAD52P43351 418 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 KCNJ3P48549 501 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 CDH11P55287 796 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 OR10A3P58181 314 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 REEP3Q6NUK4 255 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 MRPL14Q6P1L8 145 aaKnown RBP6.97□□□□□ -1.29
LIMA1-216ENST00000552909 SMARCD3Q6STE5 483 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 BAIAP2L2Q6UXY1 529 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 CD300LDQ6UXZ3 194 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 GLDNQ6ZMI3 551 aaPredicted RBP6.97□□□□□ -1.29
LIMA1-216ENST00000552909 PGAP1Q75T13 922 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 SLC16A13Q7RTY0 426 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 PRSS41Q7RTY9 318 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 TPRA1Q86W33 373 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 LDLRAD3Q86YD5 345 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 SPAG16Q8N0X2 631 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 OR6V1Q8N148 313 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 SVBPQ8N300 66 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 POGLUT1Q8NBL1 392 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 MFSD9Q8NBP5 474 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 FAM98AQ8NCA5 519 aaKnown RBP6.97□□□□□ -1.29
LIMA1-216ENST00000552909 OR4F15Q8NGB8 312 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 OR5AK3PQ8NH89 298 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 SLC7A13Q8TCU3 470 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 C2CD4CQ8TF44 421 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 RFKQ969G6 155 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 RGMAQ96B86 450 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 SGK3Q96BR1 496 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 ORAI1Q96D31 301 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 MESP1Q9BRJ9 268 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 CRB3Q9BUF7 120 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 MS4A8Q9BY19 250 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 FXYD6Q9H0Q3 95 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 MBD2Q9UBB5 411 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 CLEC4AQ9UMR7 237 aa6.97□□□□□ -1.29
LIMA1-216ENST00000552909 HELZ2Q9BYK8 2649 aaKnown RBP6.97□□□□□ -1.29
LIMA1-216ENST00000552909 A0A0G2JN53 185 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 TMEM82A0PJX8 343 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 RAB19A4D1S5 217 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 CDC14CA4D256 554 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 MASP2O00187 686 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 GPR31O00270 319 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 PLPP1O14494 284 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 PGRMC2O15173 223 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 NDUFS4O43181 175 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 SEMA7AO75326 666 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 RAB40ALP0C0E4 278 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 MMP11P24347 488 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 S100PP25815 95 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 MAPK3P27361 379 aaPredicted RBP6.96□□□□□ -1.29
LIMA1-216ENST00000552909 SOAT1P35610 550 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 AHRP35869 848 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 RNF144AP50876 292 aaPredicted RBP6.96□□□□□ -1.29
LIMA1-216ENST00000552909 CCR9P51686 369 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 NR0B1P51843 470 aaKnown RBP6.96□□□□□ -1.29
LIMA1-216ENST00000552909 TNFRSF17Q02223 184 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 STX4Q12846 297 aa6.96□□□□□ -1.29
LIMA1-216ENST00000552909 Q3ZCU0 254 aa6.96□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms