RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	PGAP1	Q75T13	922 aa		3.59	□□□□□ -1.83
USP44-208	ENST00000552440	TSEN54	Q7Z6J9	526 aa	Known RBP	3.59	□□□□□ -1.83
USP44-208	ENST00000552440	KIF2B	Q8N4N8	673 aa		3.59	□□□□□ -1.83
USP44-208	ENST00000552440	GVQW1	Q8N7I0	195 aa		3.59	□□□□□ -1.83
USP44-208	ENST00000552440	MAPKAPK5-AS1	Q8N8E1	139 aa		3.59	□□□□□ -1.83
USP44-208	ENST00000552440	C15orf54	Q8N8G6	183 aa		3.59	□□□□□ -1.83
USP44-208	ENST00000552440	LFNG	Q8NES3	379 aa		3.59	□□□□□ -1.83
USP44-208	ENST00000552440	OR4K2	Q8NGD2	314 aa		3.59	□□□□□ -1.83
USP44-208	ENST00000552440	OR5AK3P	Q8NH89	298 aa		3.59	□□□□□ -1.83
USP44-208	ENST00000552440	SETD7	Q8WTS6	366 aa	Known RBP	3.59	□□□□□ -1.83
USP44-208	ENST00000552440	PYDC1	Q8WXC3	89 aa		3.59	□□□□□ -1.83
USP44-208	ENST00000552440	RPL36AL	Q969Q0	106 aa	Known RBP	3.59	□□□□□ -1.83
USP44-208	ENST00000552440	FAHD2A	Q96GK7	314 aa		3.59	□□□□□ -1.83
USP44-208	ENST00000552440	PRAP1	Q96NZ9	151 aa		3.59	□□□□□ -1.83
USP44-208	ENST00000552440	RNF2	Q99496	336 aa		3.59	□□□□□ -1.83
USP44-208	ENST00000552440	IL12RB2	Q99665	862 aa		3.59	□□□□□ -1.83
USP44-208	ENST00000552440	COPS4	Q9BT78	406 aa		3.59	□□□□□ -1.83
USP44-208	ENST00000552440	WAC	Q9BTA9	647 aa		3.59	□□□□□ -1.83
USP44-208	ENST00000552440	KRTAP1-5	Q9BYS1	174 aa		3.59	□□□□□ -1.83
USP44-208	ENST00000552440	ING2	Q9H160	280 aa		3.59	□□□□□ -1.83
USP44-208	ENST00000552440	PLGRKT	Q9HBL7	147 aa		3.59	□□□□□ -1.83
USP44-208	ENST00000552440	PAK1IP1	Q9NWT1	392 aa	Predicted RBP	3.59	□□□□□ -1.83
USP44-208	ENST00000552440	UBQLN1	Q9UMX0	589 aa	Known RBP	3.59	□□□□□ -1.83
USP44-208	ENST00000552440	RCL1	Q9Y2P8	373 aa	Known RBP	3.59	□□□□□ -1.83
USP44-208	ENST00000552440	AMDHD2	Q9Y303	409 aa		3.59	□□□□□ -1.83
USP44-208	ENST00000552440	ZNF337	Q9Y3M9	751 aa		3.59	□□□□□ -1.83
USP44-208	ENST00000552440	CSNK1G3	Q9Y6M4	447 aa		3.59	□□□□□ -1.83
USP44-208	ENST00000552440	FANCA	O15360	1455 aa		3.59	□□□□□ -1.84
USP44-208	ENST00000552440	NEO1	Q92859	1461 aa		3.59	□□□□□ -1.84
USP44-208	ENST00000552440	TAF1	P21675	1872 aa		3.59	□□□□□ -1.84
USP44-208	ENST00000552440	TTC37	Q6PGP7	1564 aa		3.59	□□□□□ -1.84
USP44-208	ENST00000552440		A0A0A6YYD4	124 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	SLC5A10	A0PJK1	596 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	LILRA5	A6NI73	299 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440		H0Y980	276 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	PLPP1	O14494	284 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	PLPP3	O14495	311 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	IDH3B	O43837	385 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	UGT2B17	O75795	530 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	OR7A10	O76100	309 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	SYF2	O95926	243 aa	Known RBP	3.58	□□□□□ -1.84
USP44-208	ENST00000552440	MYOD1	P15172	320 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	HOXD3	P31249	432 aa	Predicted RBP	3.58	□□□□□ -1.84
USP44-208	ENST00000552440	DDOST	P39656	456 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	CD79B	P40259	229 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	EMD	P50402	254 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	FUT6	P51993	359 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	RAP1GDS1	P52306	607 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	DLX5	P56178	289 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	KRTAP10-9	P60411	292 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	LSM6	P62312	80 aa	Known RBP	3.58	□□□□□ -1.84
USP44-208	ENST00000552440	SLC35B1	P78383	322 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	SSBP2	P81877	361 aa	Predicted RBP	3.58	□□□□□ -1.84
USP44-208	ENST00000552440	DHODH	Q02127	395 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	ZNF234	Q14588	700 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	INPP5J	Q15735	1006 aa	Predicted RBP	3.58	□□□□□ -1.84
USP44-208	ENST00000552440	DUSP5	Q16690	384 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	DUSP7	Q16829	419 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	DGUOK	Q16854	277 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	GCSAML	Q5JQS6	135 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	ACTL10	Q5JWF8	245 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	EMB	Q6PCB8	327 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	PIWIL4	Q7Z3Z4	852 aa	Known RBP	3.58	□□□□□ -1.84
USP44-208	ENST00000552440	IQCF1	Q8N6M8	205 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	C22orf15	Q8WYQ4	148 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	OR8D1	Q8WZ84	308 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	PTH2	Q96A98	100 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	WFIKKN1	Q96NZ8	548 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	EPYC	Q99645	322 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	LPAR4	Q99677	370 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	TRIM51	Q9BSJ1	452 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	BCL2L14	Q9BZR8	327 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	C6orf62	Q9GZU0	229 aa	Predicted RBP	3.58	□□□□□ -1.84
USP44-208	ENST00000552440	SHARPIN	Q9H0F6	387 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	METTL9	Q9H1A3	318 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	PELI2	Q9HAT8	420 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	C3orf14	Q9HBI5	128 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	BATF3	Q9NR55	127 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	AGPAT4	Q9NRZ5	378 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	MMACHC	Q9Y4U1	282 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	STYXL1	Q9Y6J8	313 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	ELP1	O95163	1332 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	ABCB11	O95342	1321 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	MAPK8IP3	Q9UPT6	1336 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	NCOA1	Q15788	1441 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	PREX1	Q8TCU6	1659 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	GLYATL1P3	A0A0U1RQE8	302 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	GNG14	A0A1W2PPG7	69 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	TCRBV9S1A1T	A0A576	114 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	GAGE12J	A6NER3	117 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	HIDE1	A8MVS5	230 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	ZNF487	B1APH4	448 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440		G3V3Y1	287 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	HSD17B6	O14756	317 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	MPDU1	O75352	247 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	CEACAM4	O75871	244 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	OXSR1	O95747	527 aa	Predicted RBP	3.58	□□□□□ -1.84
USP44-208	ENST00000552440	JCHAIN	P01591	159 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	ORM1	P02763	201 aa		3.58	□□□□□ -1.84
USP44-208	ENST00000552440	M6PR	P20645	277 aa		3.58	□□□□□ -1.84

Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms