RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 HSMCR30P0CW71 290 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 DBTP11182 482 aaKnown RBP3.49□□□□□ -1.85
LIMA1-205ENST00000550592 COX5AP20674 150 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 AQP1P29972 269 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 PTGDSP41222 190 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 MAP3K8P41279 467 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 RGRP47804 291 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 EFNB2P52799 333 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 KLRC3Q07444 240 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 NCBP1Q09161 790 aaKnown RBP3.49□□□□□ -1.85
LIMA1-205ENST00000550592 CCDC173Q0VFZ6 552 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 RABL6Q3YEC7 729 aaPredicted RBP3.49□□□□□ -1.85
LIMA1-205ENST00000550592 RNF212Q495C1 297 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 CEP55Q53EZ4 464 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 C1orf220Q5T0J3 134 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 LCE3CQ5T5A8 94 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 FHL5Q5TD97 284 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 ZSCAN25Q6NSZ9 544 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 PMF1Q6P1K2 205 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 ZNF584Q8IVC4 421 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 NRMQ8IXM6 262 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 C14orf178Q8N769 122 aaPredicted RBP3.49□□□□□ -1.85
LIMA1-205ENST00000550592 EIF1ADQ8N9N8 165 aaKnown RBP3.49□□□□□ -1.85
LIMA1-205ENST00000550592 OR10H4Q8NGA5 316 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 OR56B4Q8NH76 319 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 B3GALT6Q96L58 329 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 CNOT6LQ96LI5 555 aaKnown RBP3.49□□□□□ -1.85
LIMA1-205ENST00000550592 MAPKAP1Q9BPZ7 522 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 CNPY3Q9BT09 278 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 PARD6BQ9BYG5 372 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 NMUR2Q9GZQ4 415 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 POPDC2Q9HBU9 364 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 B4GALT7Q9UBV7 327 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 CLEC4AQ9UMR7 237 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 PRPF19Q9UMS4 504 aaKnown RBP3.49□□□□□ -1.85
LIMA1-205ENST00000550592 NDRG2Q9UN36 371 aaKnown RBP3.49□□□□□ -1.85
LIMA1-205ENST00000550592 CABIN1Q9Y6J0 2220 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 COL12A1Q99715 3063 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 TSC2P49815 1807 aa3.49□□□□□ -1.85
LIMA1-205ENST00000550592 USP9YO00507 2555 aaPredicted RBP3.48□□□□□ -1.85
LIMA1-205ENST00000550592 VSTM2BA6NLU5 285 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 TMEM110-MUSTN1A8MSY1 372 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 TRDCB7Z8K6 153 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 PRKAB2O43741 272 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 CIAO1O76071 339 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 LGALS2P05162 132 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 ZNF286BP0CG31 522 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 PCMT1P22061 227 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 GCAP28676 217 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 ADORA1P30542 326 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 LEPP41159 167 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 AIF1P55008 147 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 ZNF45Q02386 682 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 FGL1Q08830 312 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 KYAT1Q16773 422 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 OR4F3Q6IEY1 312 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 ACOT7LQ6ZUV0 252 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 HSD17B13Q7Z5P4 300 aaPredicted RBP3.48□□□□□ -1.85
LIMA1-205ENST00000550592 ZNF589Q86UQ0 364 aaPredicted RBP3.48□□□□□ -1.85
LIMA1-205ENST00000550592 SLC35F2Q8IXU6 374 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 ABCA7Q8IZY2 2146 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 LRRC75A-AS1Q8N1F1 130 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 OR2L13Q8N349 312 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 OR5D13Q8NGL4 314 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 OR9A1PQ8NGU1 263 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 PPTC7Q8NI37 304 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 ZNF564Q8TBZ8 553 aaPredicted RBP3.48□□□□□ -1.85
LIMA1-205ENST00000550592 HTR3CQ8WXA8 447 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 FGF14Q92915 247 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 MED8Q96G25 268 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 SMIM14Q96QK8 99 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 TBX15Q96SF7 602 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 SECISBP2Q96T21 854 aaKnown RBP3.48□□□□□ -1.85
LIMA1-205ENST00000550592 KLHDC3Q9BQ90 382 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 CAPS2Q9BXY5 557 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 RAB34Q9BZG1 259 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 TRIM4Q9C037 500 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 CWH43Q9H720 699 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 PTGES2Q9H7Z7 377 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 ISG20L2Q9H9L3 353 aaKnown RBP3.48□□□□□ -1.85
LIMA1-205ENST00000550592 WDFY3Q8IZQ1 3526 aa3.48□□□□□ -1.85
LIMA1-205ENST00000550592 FANCIQ9NVI1 1328 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 ATG2BQ96BY7 2078 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 CELSR3Q9NYQ7 3312 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 ZNF208O43345 1280 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 PFKFB2O60825 505 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 IL1BP01584 269 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 OPN1MWP04001 364 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 KRTAP1-4P0C5Y4 121 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 SMIM10L2AP0DMW4 78 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 SMIM10L2BP0DMW5 78 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 OPN1MW2P0DN77 364 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 OPN1MW3P0DN78 364 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 POU2F1P14859 743 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 CCT3P49368 545 aaKnown RBP3.47□□□□□ -1.85
LIMA1-205ENST00000550592 CEBPDP49716 269 aaPredicted RBP3.47□□□□□ -1.85
LIMA1-205ENST00000550592 TIMM10P62072 90 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 DYNLL1P63167 89 aaKnown RBP3.47□□□□□ -1.85
LIMA1-205ENST00000550592 KLRB1Q12918 225 aa3.47□□□□□ -1.85
LIMA1-205ENST00000550592 RIPK1Q13546 671 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms