RNA–Protein interactions for RNA: ENST00000548825.6

PRPF40B-209, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRPF40B, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-209ENST00000548825 MSANTD3Q96H12 275 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 TSPAN32Q96QS1 320 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 CMKLR1Q99788 373 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 MED29Q9NX70 200 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 HLA-DOBP13765 273 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 PSMA6P60900 246 aaKnown RBP12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 BDH1Q02338 343 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 LINC00303Q3SY05 128 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 OR4D10Q8NGI6 311 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 C8orf44Q96CB5 159 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 ELMOD3Q96FG2 381 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 INTS14Q96SY0 518 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 NPAS1Q99742 590 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 HRASLSQ9HDD0 168 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 KLHL9Q9P2J3 617 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 NPFFR2Q9Y5X5 522 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 HS3ST3A1Q9Y663 406 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 GPR171O14626 319 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 ARPC5O15511 151 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 SRPX2O60687 465 aaPredicted RBP12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 POU2F2P09086 479 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 SLC2A1P11166 492 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 GP1BBP13224 206 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 FOLR1P15328 257 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 EGR4Q05215 589 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 ALKBH1Q13686 389 aaKnown RBP12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 TRAM1Q15629 374 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 GKN2Q86XP6 184 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 TCTE3Q8IZS6 198 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 BOLLQ8N9W6 283 aaKnown RBP12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 NAXEQ8NCW5 288 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 KCTD12Q96CX2 325 aaKnown RBP12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 ZNF576Q9H609 170 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 NUBP2Q9Y5Y2 271 aa12.4□□□□□ -0.42
PRPF40B-209ENST00000548825 PI4KAP42356 2102 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 EFCAB7A8K855 629 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 ALX3O95076 343 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 NSA2O95478 260 aaKnown RBP12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 FAM157BP0CG42 384 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 MST1P26927 711 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 MNDAP41218 407 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 ACKR1Q16570 336 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 FBXL3Q9UKT7 428 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 ELF5Q9UKW6 265 aaPredicted RBP12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 EP300Q09472 2414 aaPredicted RBP12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 M0QYG6 137 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 ZNF749O43361 778 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 CCR9P51686 369 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 CCINQ13939 588 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 OR7A5Q15622 319 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 CDONQ4KMG0 1287 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 PXKQ7Z7A4 578 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 SLC35F3Q8IY50 421 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 LSMEM1Q8N8F7 131 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 FBRSQ9HAH7 460 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 ABRACLQ9P1F3 81 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 A0A1B0GVI7 797 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 FAM221BA6H8Z2 402 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 ADRA2CP18825 462 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 PSMB1P20618 241 aaKnown RBP12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 LCN1P31025 176 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 SDHAP31040 664 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 RBM34P42696 430 aaKnown RBP12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 RAB30Q15771 203 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 PRTGQ2VWP7 1150 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 Q499Y3 187 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 UBE2NLQ5JXB2 153 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 LIN54Q6MZP7 749 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 TMEM205Q6UW68 189 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 ZNF417Q8TAU3 575 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 SLC25A38Q96DW6 304 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 LCORQ96JN0 433 aaPredicted RBP12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 ZNF587Q96SQ5 575 aaPredicted RBP12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 GFI1Q99684 422 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 LMF2Q9BU23 707 aaKnown RBP12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 GON7Q9BXV9 100 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 MED11Q9P086 117 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 B9D1Q9UPM9 204 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 CAMK2AQ9UQM7 478 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 CEP250Q9BV73 2442 aa12.39□□□□□ -0.43
PRPF40B-209ENST00000548825 FITM1A5D6W6 292 aa12.38□□□□□ -0.43
PRPF40B-209ENST00000548825 PDCD5O14737 125 aa12.38□□□□□ -0.43
PRPF40B-209ENST00000548825 TRAPPC2P0DI81 140 aa12.38□□□□□ -0.43
PRPF40B-209ENST00000548825 TRAPPC2BP0DI82 140 aa12.38□□□□□ -0.43
PRPF40B-209ENST00000548825 FBLP22087 321 aaKnown RBP12.38□□□□□ -0.43
PRPF40B-209ENST00000548825 OR3A3P47888 321 aa12.38□□□□□ -0.43
PRPF40B-209ENST00000548825 PRKXP51817 358 aa12.38□□□□□ -0.43
PRPF40B-209ENST00000548825 RAB14P61106 215 aa12.38□□□□□ -0.43
PRPF40B-209ENST00000548825 GSG1Q2KHT4 349 aa12.38□□□□□ -0.43
PRPF40B-209ENST00000548825 SLC29A4Q7RTT9 530 aa12.38□□□□□ -0.43
PRPF40B-209ENST00000548825 CDH24Q86UP0 819 aa12.38□□□□□ -0.43
PRPF40B-209ENST00000548825 PLCZ1Q86YW0 608 aa12.38□□□□□ -0.43
PRPF40B-209ENST00000548825 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.38□□□□□ -0.43
PRPF40B-209ENST00000548825 OR2G2Q8NGZ5 317 aa12.38□□□□□ -0.43
PRPF40B-209ENST00000548825 COQ8AQ8NI60 647 aa12.38□□□□□ -0.43
PRPF40B-209ENST00000548825 ZNF775Q96BV0 537 aaPredicted RBP12.38□□□□□ -0.43
PRPF40B-209ENST00000548825 COA3Q9Y2R0 106 aaPredicted RBP12.38□□□□□ -0.43
PRPF40B-209ENST00000548825 EMC9Q9Y3B6 208 aa12.38□□□□□ -0.43
PRPF40B-209ENST00000548825 CACNA1GO43497 2377 aa12.38□□□□□ -0.43
PRPF40B-209ENST00000548825 SUSD5O60279 629 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms