RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.66□□□□□ -1.02
CLIP1-214ENST00000540539 CD163Q86VB7 1156 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 DEFB106AQ8N104 65 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 SEMA6DQ8NFY4 1073 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 BRIX1Q8TDN6 353 aaKnown RBP8.66□□□□□ -1.02
CLIP1-214ENST00000540539 FAHD2AQ96GK7 314 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 RCC1LQ96I51 464 aaKnown RBP8.66□□□□□ -1.02
CLIP1-214ENST00000540539 RAB33BQ9H082 229 aa8.66□□□□□ -1.02
CLIP1-214ENST00000540539 POLR2J3Q9H1A7 115 aaKnown RBP8.66□□□□□ -1.02
CLIP1-214ENST00000540539 PIN4Q9Y237 131 aaKnown RBP8.66□□□□□ -1.02
CLIP1-214ENST00000540539 TDRD15B5MCY1 1934 aaKnown RBP8.65□□□□□ -1.02
CLIP1-214ENST00000540539 SCN5AQ14524 2016 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 H0YIV9 168 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 KCNAB3O43448 404 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 OR1F1O43749 312 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 PNPP00491 289 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 TGFB1P01137 390 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 CHRM4P08173 479 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 CD52P31358 61 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 CDC34P49427 236 aaPredicted RBP8.65□□□□□ -1.02
CLIP1-214ENST00000540539 DVL1P1P54792 670 aaPredicted RBP8.65□□□□□ -1.02
CLIP1-214ENST00000540539 ACTBP60709 375 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 ACTA2P62736 377 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 ACTG1P63261 375 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 ACTG2P63267 376 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 ACTC1P68032 377 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 ACTA1P68133 377 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 RASGEF1BQ0VAM2 473 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 TAF13Q15543 124 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 ZDHHC20Q5W0Z9 365 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 TCTN3Q6NUS6 607 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 C1orf94Q6P1W5 598 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 TEX38Q6PEX7 206 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 LINGO4Q6UY18 593 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 CLECL1Q8IZS7 167 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 OR4K2Q8NGD2 314 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 RNASEH2CQ8TDP1 164 aaKnown RBP8.65□□□□□ -1.02
CLIP1-214ENST00000540539 RELTQ969Z4 430 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 ZNF649Q9BS31 505 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 RIOK2Q9BVS4 552 aaKnown RBP8.65□□□□□ -1.02
CLIP1-214ENST00000540539 CSTL1Q9H114 145 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 SYT4Q9H2B2 425 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 PADI3Q9ULW8 664 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 ZFP30Q9Y2G7 519 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 ENPP4Q9Y6X5 453 aa8.65□□□□□ -1.02
CLIP1-214ENST00000540539 ANKRD36A6QL64 1941 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 DCTN6O00399 190 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 GPR182O15218 404 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 CCL25O15444 150 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 XRCC3O43542 346 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 ZNF432O94892 652 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 SCAF4O95104 1147 aaKnown RBP8.65□□□□□ -1.03
CLIP1-214ENST00000540539 VAMP5O95183 116 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 CPSF4O95639 269 aaKnown RBP8.65□□□□□ -1.03
CLIP1-214ENST00000540539 PTHLHP12272 177 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 LPAR6P43657 344 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 RAP1BP61224 184 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 SELENOTP62341 195 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 HAGHQ16775 308 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 PRRT3Q5FWE3 981 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 VWA2Q5GFL6 755 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 TNFAIP8L2Q6P589 184 aaPredicted RBP8.65□□□□□ -1.03
CLIP1-214ENST00000540539 FAM83HQ6ZRV2 1179 aaPredicted RBP8.65□□□□□ -1.03
CLIP1-214ENST00000540539 CMTM4Q8IZR5 234 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 C11orf42Q8N5U0 333 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 OR1L6Q8NGR2 347 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 GEMIN6Q8WXD5 167 aaKnown RBP8.65□□□□□ -1.03
CLIP1-214ENST00000540539 NDRG1Q92597 394 aaKnown RBP8.65□□□□□ -1.03
CLIP1-214ENST00000540539 ECHDC3Q96DC8 303 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 SMARCD1Q96GM5 515 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 NKX3-1Q99801 234 aaPredicted RBP8.65□□□□□ -1.03
CLIP1-214ENST00000540539 ATG5Q9H1Y0 275 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 CDT1Q9H211 546 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 P2RY12Q9H244 342 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 IPPKQ9H8X2 491 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 FOXJ2Q9P0K8 574 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 MYOTQ9UBF9 498 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 TBX21Q9UL17 535 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 GPR52Q9Y2T5 361 aa8.65□□□□□ -1.03
CLIP1-214ENST00000540539 ANK1P16157 1881 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 CCDC88CQ9P219 2028 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 PRAMEF26H0Y7S4 382 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 GABRDO14764 452 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 FFAR1O14842 300 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 SMAD9O15198 467 aaKnown RBP8.64□□□□□ -1.03
CLIP1-214ENST00000540539 TBX6O95947 436 aaPredicted RBP8.64□□□□□ -1.03
CLIP1-214ENST00000540539 OR4A8P0C604 315 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 GABRR1P24046 479 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 OPRD1P41143 372 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 PPM1FP49593 454 aaPredicted RBP8.64□□□□□ -1.03
CLIP1-214ENST00000540539 OR8G2PQ6IF36 304 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 GALNTL5Q7Z4T8 443 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 SLC35E3Q7Z769 313 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 LGALS14Q8TCE9 139 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 SMAD5Q99717 465 aaKnown RBP8.64□□□□□ -1.03
CLIP1-214ENST00000540539 CDC6Q99741 560 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 BRF2Q9HAW0 419 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.64□□□□□ -1.03
CLIP1-214ENST00000540539 TLR8Q9NR97 1041 aaKnown RBP8.64□□□□□ -1.03
CLIP1-214ENST00000540539 PIGVQ9NUD9 493 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms