RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 NAT2P11245 290 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 ANPEPP15144 967 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 LSP1P33241 339 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 CSNK1A1P48729 337 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 SLC18A1P54219 525 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 RGS8P57771 180 aaPredicted RBP11.61□□□□□ -0.55
SS18-204ENST00000539244 NCALDP61601 193 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 ACTG1P63261 375 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 CDK6Q00534 326 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 MYBPC1Q00872 1141 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 RAB39AQ14964 217 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 OR1Q1Q15612 314 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 GCNT6Q5T4J0 391 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 RGS7BPQ6MZT1 257 aaPredicted RBP11.61□□□□□ -0.55
SS18-204ENST00000539244 SLC2A7Q6PXP3 512 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 KRT73Q86Y46 540 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 SKA3Q8IX90 412 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 C10orf111Q8N326 155 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 ANKRD42Q8N9B4 389 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 SGMS2Q8NHU3 365 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 NFKBIDQ8NI38 313 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 TMEM54Q969K7 222 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 TMEM38AQ9H6F2 299 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 TMEM27Q9HBJ8 222 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 LPAR2Q9HBW0 351 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 NKIRAS2Q9NYR9 191 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 SELENONQ9NZV5 590 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 DUSP13Q9UII6 198 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 FZR1Q9UM11 496 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 WNK2Q9Y3S1 2297 aa11.61□□□□□ -0.55
SS18-204ENST00000539244 A0A1W2PPW3 197 aa11.6□□□□□ -0.55
SS18-204ENST00000539244 TMEM120BA0PK00 339 aa11.6□□□□□ -0.55
SS18-204ENST00000539244 SLC22A23A1A5C7 686 aa11.6□□□□□ -0.55
SS18-204ENST00000539244 PRORSD1PA6NEY8 169 aa11.6□□□□□ -0.55
SS18-204ENST00000539244 C17orf100A8MU93 164 aa11.6□□□□□ -0.55
SS18-204ENST00000539244 LRRN3E7EW58 273 aa11.6□□□□□ -0.55
SS18-204ENST00000539244 TRIM77I1YAP6 450 aa11.6□□□□□ -0.55
SS18-204ENST00000539244 ENTPD5O75356 428 aa11.6□□□□□ -0.55
SS18-204ENST00000539244 ZNF250P15622 560 aa11.6□□□□□ -0.55
SS18-204ENST00000539244 EGR1P18146 543 aa11.6□□□□□ -0.55
SS18-204ENST00000539244 EPHA1P21709 976 aa11.6□□□□□ -0.55
SS18-204ENST00000539244 PPIBP23284 216 aaKnown RBP11.6□□□□□ -0.55
SS18-204ENST00000539244 MAGEB1P43366 347 aa11.6□□□□□ -0.55
SS18-204ENST00000539244 CDH12P55289 794 aa11.6□□□□□ -0.55
SS18-204ENST00000539244 PCGF3Q3KNV8 242 aa11.6□□□□□ -0.55
SS18-204ENST00000539244 LINC00114Q6XXX2 140 aa11.6□□□□□ -0.55
SS18-204ENST00000539244 WDR88Q6ZMY6 472 aa11.6□□□□□ -0.55
SS18-204ENST00000539244 SLC22A24Q8N4F4 322 aa11.6□□□□□ -0.55
SS18-204ENST00000539244 OR5J2Q8NH18 312 aa11.6□□□□□ -0.55
SS18-204ENST00000539244 OR6X1Q8NH79 312 aa11.6□□□□□ -0.55
SS18-204ENST00000539244 FGFBP3Q8TAT2 258 aa11.6□□□□□ -0.55
SS18-204ENST00000539244 TRIM44Q96DX7 344 aaPredicted RBP11.6□□□□□ -0.55
SS18-204ENST00000539244 JMJD8Q96S16 334 aa11.6□□□□□ -0.55
SS18-204ENST00000539244 WFDC6Q9BQY6 131 aa11.6□□□□□ -0.55
SS18-204ENST00000539244 RBM4Q9BWF3 364 aaKnown RBP11.6□□□□□ -0.55
SS18-204ENST00000539244 GLTPQ9NZD2 209 aa11.6□□□□□ -0.55
SS18-204ENST00000539244 GPR160Q9UJ42 338 aa11.6□□□□□ -0.55
SS18-204ENST00000539244 TRBV5-3A0A0A0MS03 114 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 FMO6PO60774 539 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 DEAF1O75398 565 aaPredicted RBP11.59□□□□□ -0.55
SS18-204ENST00000539244 SNAP29O95721 258 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 CLPTM1O96005 669 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 AVPP01185 164 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 PATE4P0C8F1 98 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 OR8G3PP0DMU2 310 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 AHCYP23526 432 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 LIMS1P48059 325 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 BIDP55957 195 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 SELENOVP59797 346 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 ZP4Q12836 540 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 NKPD1Q17RQ9 610 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 ACSM5Q6NUN0 579 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 FAHD2BQ6P2I3 314 aaPredicted RBP11.59□□□□□ -0.55
SS18-204ENST00000539244 ZNF613Q6PF04 617 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 DPPA2Q7Z7J5 298 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 PEG10Q86TG7 708 aaKnown RBP11.59□□□□□ -0.55
SS18-204ENST00000539244 FUNDC1Q8IVP5 155 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 C3orf56Q8N813 242 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 SLC30A7Q8NEW0 376 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 GCDHQ92947 438 aaPredicted RBP11.59□□□□□ -0.55
SS18-204ENST00000539244 FAHD2AQ96GK7 314 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 ZNF607Q96SK3 696 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 PARD6BQ9BYG5 372 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 C1orf198Q9H425 327 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 ZNF665Q9H7R5 613 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 SLC52A3Q9NQ40 469 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 TCF7L2Q9NQB0 619 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 HINT3Q9NQE9 182 aaKnown RBP11.59□□□□□ -0.55
SS18-204ENST00000539244 TMEM38BQ9NVV0 291 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 SLCO1C1Q9NYB5 712 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 SLAMF8Q9P0V8 285 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 TAAR3PQ9P1P4 343 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 MGAM2Q2M2H8 2515 aa11.59□□□□□ -0.55
SS18-204ENST00000539244 SERPINB7O75635 380 aa11.58□□□□□ -0.56
SS18-204ENST00000539244 SERPINI2O75830 405 aa11.58□□□□□ -0.56
SS18-204ENST00000539244 ADORA3P0DMS8 318 aa11.58□□□□□ -0.56
SS18-204ENST00000539244 GPX2P18283 190 aa11.58□□□□□ -0.56
SS18-204ENST00000539244 CRYBB2P43320 205 aa11.58□□□□□ -0.56
SS18-204ENST00000539244 KLF3P57682 345 aaPredicted RBP11.58□□□□□ -0.56
SS18-204ENST00000539244 CCL8P80075 99 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms