RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 SLC2A8Q9NY64 477 aa6.11□□□□□ -1.43
USP28-207ENST00000538475 DNAJB11Q9UBS4 358 aa6.11□□□□□ -1.43
USP28-207ENST00000538475 GHRLQ9UBU3 117 aa6.11□□□□□ -1.43
USP28-207ENST00000538475 KLK11Q9UBX7 282 aa6.11□□□□□ -1.43
USP28-207ENST00000538475 LPAR3Q9UBY5 353 aa6.11□□□□□ -1.43
USP28-207ENST00000538475 SHPKQ9UHJ6 478 aa6.11□□□□□ -1.43
USP28-207ENST00000538475 ICAM5Q9UMF0 924 aa6.11□□□□□ -1.43
USP28-207ENST00000538475 OR51B4Q9Y5P0 310 aa6.11□□□□□ -1.43
USP28-207ENST00000538475 LRRK1Q38SD2 2015 aa6.11□□□□□ -1.43
USP28-207ENST00000538475 TBC1D3DA0A087WVF3 549 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 TBC1D3IA0A087WXS9 549 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 TBC1D3EA0A087X179 549 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 TBC1D3KA0A087X1G2 549 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 A0A1B0GVC2 190 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 TBC1D3FA6NER0 549 aaPredicted RBP6.1□□□□□ -1.43
USP28-207ENST00000538475 A6NIN4 97 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 TBC1D3LB9A6J9 549 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 E9PI62 339 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 RNASEK-C17orf49H0YIS7 233 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 EMC8O43402 210 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 GMFGO60234 142 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 B4GALT3O60512 393 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 SRPX2O60687 465 aaPredicted RBP6.1□□□□□ -1.43
USP28-207ENST00000538475 EPPINO95925 133 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 IFI6P09912 130 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 ACRP10323 421 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 SELLP14151 372 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 PAX1P15863 534 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 HIST1H1BP16401 226 aaKnown RBP6.1□□□□□ -1.43
USP28-207ENST00000538475 TBPP20226 339 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 C5AR1P21730 350 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 ACHEP22303 614 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 CDK2P24941 298 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 ITGA3P26006 1051 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 S100A2P29034 98 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 NTSP30990 170 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 DCTDP32321 178 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 PYCR1P32322 319 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 PRSS3P35030 304 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 BUD31P41223 144 aaPredicted RBP6.1□□□□□ -1.43
USP28-207ENST00000538475 ACTR1BP42025 376 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 CDX1P47902 265 aaPredicted RBP6.1□□□□□ -1.43
USP28-207ENST00000538475 NPBWR1P48145 328 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 SPINT3P49223 89 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 PRKXP51817 358 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 TAS2R31P59538 309 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 PKIAP61925 76 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 SNRPD1P62314 119 aaKnown RBP6.1□□□□□ -1.43
USP28-207ENST00000538475 RPS24P62847 133 aaKnown RBP6.1□□□□□ -1.43
USP28-207ENST00000538475 SIM1P81133 766 aaPredicted RBP6.1□□□□□ -1.43
USP28-207ENST00000538475 SLC7A9P82251 487 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 MC1RQ01726 317 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 PRKCZQ05513 592 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 TGM3Q08188 693 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 AIMP2Q13155 320 aaKnown RBP6.1□□□□□ -1.43
USP28-207ENST00000538475 ARHGAP19Q14CB8 494 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 NR0B2Q15466 257 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 SSX2Q16385 188 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 PCGF3Q3KNV8 242 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 DCAF12L2Q5VW00 463 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 KHDRBS2Q5VWX1 349 aaKnown RBP6.1□□□□□ -1.43
USP28-207ENST00000538475 OR10K2Q6IF99 312 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 TBC1D3CQ6IPX1 549 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 TMEM71Q6P5X7 295 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 FCRLAQ7L513 359 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 OTOP2Q7RTS6 562 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 TECPR1Q7Z6L1 1165 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 RANBP3LQ86VV4 465 aaPredicted RBP6.1□□□□□ -1.43
USP28-207ENST00000538475 ZNF227Q86WZ6 799 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 NUDT13Q86X67 352 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 DND1Q8IYX4 353 aaKnown RBP6.1□□□□□ -1.43
USP28-207ENST00000538475 TBC1D3Q8IZP1 549 aaPredicted RBP6.1□□□□□ -1.43
USP28-207ENST00000538475 CFAP52Q8N1V2 620 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 RNF175Q8N4F7 328 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 TRAM1L1Q8N609 369 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 PNLDC1Q8NA58 520 aaKnown RBP6.1□□□□□ -1.43
USP28-207ENST00000538475 STEAP2Q8NFT2 490 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 OR9A4Q8NGU2 314 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 OR13D1Q8NGV5 346 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 OR4C6Q8NH72 309 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 MED8Q96G25 268 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 SLC41A3Q96GZ6 507 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 SCLYQ96I15 445 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 LURAP1Q96LR2 239 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 SAMD8Q96LT4 415 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 SMIM14Q96QK8 99 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 PRRT1Q99946 306 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 AIF1LQ9BQI0 150 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 GGACTQ9BVM4 153 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 RSPO3Q9BXY4 272 aaPredicted RBP6.1□□□□□ -1.43
USP28-207ENST00000538475 NMES1Q9C002 83 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 OR52D1Q9H346 318 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 EXO5Q9H790 373 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 MTHFD2LQ9H903 347 aaPredicted RBP6.1□□□□□ -1.43
USP28-207ENST00000538475 RHOFQ9HBH0 211 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 TXNRD2Q9NNW7 524 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 MEPEQ9NQ76 525 aaPredicted RBP6.1□□□□□ -1.43
USP28-207ENST00000538475 PARP11Q9NR21 331 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 DUSP22Q9NRW4 184 aa6.1□□□□□ -1.43
USP28-207ENST00000538475 ASF1BQ9NVP2 202 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms