RNA–Protein interactions for RNA: ENST00000538070.1

UBE3B-208, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 5

Gene UBE3B, Length 3,655 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-208ENST00000538070 CNOT1A5YKK6 2376 aaKnown RBP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 PHF3Q92576 2039 aaKnown RBP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 TRAV8-7A0A075B6U6 113 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 TRBV11-1A0A0K0K1C0 115 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 TRABD2BA6NFA1 517 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 GMDSO60547 372 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 NOS1APO75052 506 aaPredicted RBP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 GNALP38405 381 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 UBE2MP61081 183 aaKnown RBP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 RRAS2P62070 204 aaPredicted RBP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 BDH1Q02338 343 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 POU3F1Q03052 451 aaPredicted RBP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 MAB21L1Q13394 359 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 MAMDC2Q7Z304 686 aaPredicted RBP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 TPRA1Q86W33 373 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 ZNF440Q8IYI8 595 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 ARHGEF39Q8N4T4 335 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 EID2Q8N6I1 236 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 DVL3Q92997 716 aaPredicted RBP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 MICU1Q9BPX6 476 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 CGGBP1Q9UFW8 167 aaPredicted RBP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 SPATA2Q9UM82 520 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 A0A1B0GX78 115 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 CLPSP04118 112 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 H2AFB2P0C5Z0 115 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 CXCL3P19876 107 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 CFL1P23528 166 aaKnown RBP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 RBMS1P29558 406 aaKnown RBP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 HTR2BP41595 481 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 RPS11P62280 158 aaKnown RBP eCLIP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 SPOCK1Q08629 439 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 SMAD4Q13485 552 aaKnown RBP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 ALKBH1Q13686 389 aaKnown RBP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 EIF2B1Q14232 305 aaKnown RBP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 TRAM1Q15629 374 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 CDONQ4KMG0 1287 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 HIST2H2ABQ8IUE6 130 aaPredicted RBP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 GIMAP1Q8WWP7 306 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 KIAA1143Q96AT1 154 aaPredicted RBP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 S100A16Q96FQ6 103 aaKnown RBP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 ICAM5Q9UMF0 924 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 TEX51A0A1B0GUA7 166 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 ARPC1BO15143 372 aaKnown RBP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 ZNF354AO60765 605 aaPredicted RBP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 SCRG1O75711 98 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 GATBO75879 557 aaKnown RBP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 SLC2A1P11166 492 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 CTLA4P16410 223 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 DCTDP32321 178 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 GABRA4P48169 554 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 VEGFCP49767 419 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 CLDN20P56880 219 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 GPLD1P80108 840 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 CDK10Q15131 360 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 LINC01590Q5TEZ4 76 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 GLB1L2Q8IW92 636 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 RGP1Q92546 391 aaPredicted RBP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 MS4A3Q96HJ5 214 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 KLHL15Q96M94 604 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 SEC22CQ9BRL7 303 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 B3GNT4Q9C0J1 378 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 SMOC1Q9H4F8 434 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 METTL7AQ9H8H3 244 aa7.88□□□□□ -1.15
UBE3B-208ENST00000538070 MRPL39Q9NYK5 338 aaKnown RBP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 EIF3KQ9UBQ5 218 aaKnown RBP7.88□□□□□ -1.15
UBE3B-208ENST00000538070 TRAV18A0A075B6X5 111 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 A0A1W2PNR3 127 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 IFITM5A6NNB3 132 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 NPIPA5E9PKD4 350 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 F10P00742 488 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 LIPCP11150 499 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 IFNGR1P15260 489 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 ZNF823P16415 610 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 CDK2P24941 298 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 STOMP27105 288 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 PRKXP51817 358 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 GUCA2AQ02747 115 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 EXOSC6Q5RKV6 272 aaKnown RBP7.87□□□□□ -1.15
UBE3B-208ENST00000538070 C1orf140Q5VVS0 124 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 PAPD4Q6PIY7 484 aaKnown RBP7.87□□□□□ -1.15
UBE3B-208ENST00000538070 LINC00114Q6XXX2 140 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 STAC2Q6ZMT1 411 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 SLC16A9Q7RTY1 509 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 CMIPQ8IY22 773 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 ZNF687Q8N1G0 1237 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 ADAMTS18Q8TE60 1221 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 SNAPC3Q92966 411 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 YIPF5Q969M3 257 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 FAM46BQ96A09 425 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 NXPE2Q96DL1 559 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 PELOQ9BRX2 385 aaKnown RBP7.87□□□□□ -1.15
UBE3B-208ENST00000538070 CRB3Q9BUF7 120 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 OR51J1Q9H342 316 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 ANKRD10Q9NXR5 420 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 ZNF69Q9UC07 566 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 EPHA6Q9UF33 1036 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 MGAT4AQ9UM21 535 aa7.87□□□□□ -1.15
UBE3B-208ENST00000538070 NPIPA1Q9UND3 350 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms