RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ACVR1BP36896 505 aa12.85□□□□□ -0.35
USP28-204ENST00000537642 AQP2P41181 271 aa12.85□□□□□ -0.35
USP28-204ENST00000537642 CAPZA2P47755 286 aa12.85□□□□□ -0.35
USP28-204ENST00000537642 IDH3GP51553 393 aaPredicted RBP12.85□□□□□ -0.35
USP28-204ENST00000537642 TNK1Q13470 666 aa12.85□□□□□ -0.35
USP28-204ENST00000537642 ETFDHQ16134 617 aa12.85□□□□□ -0.35
USP28-204ENST00000537642 LRFN4Q6PJG9 635 aa12.85□□□□□ -0.35
USP28-204ENST00000537642 OFCC1Q8IZS5 231 aa12.85□□□□□ -0.35
USP28-204ENST00000537642 RBM15BQ8NDT2 890 aaKnown RBP12.85□□□□□ -0.35
USP28-204ENST00000537642 MOSPD2Q8NHP6 518 aa12.85□□□□□ -0.35
USP28-204ENST00000537642 ZNF566Q969W8 418 aa12.85□□□□□ -0.35
USP28-204ENST00000537642 FAM162AQ96A26 154 aa12.85□□□□□ -0.35
USP28-204ENST00000537642 FOXB1Q99853 325 aa12.85□□□□□ -0.35
USP28-204ENST00000537642 NOX3Q9HBY0 568 aa12.85□□□□□ -0.35
USP28-204ENST00000537642 SPAG4Q9NPE6 437 aa12.85□□□□□ -0.35
USP28-204ENST00000537642 ZNF224Q9NZL3 707 aa12.85□□□□□ -0.35
USP28-204ENST00000537642 EGFL7Q9UHF1 273 aa12.85□□□□□ -0.35
USP28-204ENST00000537642 TLN2Q9Y4G6 2542 aa12.84□□□□□ -0.35
USP28-204ENST00000537642 PRSS23O95084 383 aa12.84□□□□□ -0.35
USP28-204ENST00000537642 LY6G6DO95868 133 aa12.84□□□□□ -0.35
USP28-204ENST00000537642 IFI30P13284 250 aa12.84□□□□□ -0.35
USP28-204ENST00000537642 IFNA8P32881 189 aa12.84□□□□□ -0.35
USP28-204ENST00000537642 HGFACQ04756 655 aa12.84□□□□□ -0.35
USP28-204ENST00000537642 RUNX1T1Q06455 604 aa12.84□□□□□ -0.35
USP28-204ENST00000537642 NPRL3Q12980 569 aa12.84□□□□□ -0.35
USP28-204ENST00000537642 LAPTM4AQ15012 233 aa12.84□□□□□ -0.35
USP28-204ENST00000537642 TRAM2Q15035 370 aa12.84□□□□□ -0.35
USP28-204ENST00000537642 MST1LQ2TV78 715 aa12.84□□□□□ -0.35
USP28-204ENST00000537642 CLEC9AQ6UXN8 241 aa12.84□□□□□ -0.35
USP28-204ENST00000537642 DNM1P46Q6ZS02 220 aa12.84□□□□□ -0.35
USP28-204ENST00000537642 Q71RC1 249 aaPredicted RBP12.84□□□□□ -0.35
USP28-204ENST00000537642 FKBP9P1Q75LS8 142 aa12.84□□□□□ -0.35
USP28-204ENST00000537642 TSEN54Q7Z6J9 526 aaKnown RBP12.84□□□□□ -0.35
USP28-204ENST00000537642 ASB10Q8WXI3 467 aa12.84□□□□□ -0.35
USP28-204ENST00000537642 ZNF75AQ96N20 296 aa12.84□□□□□ -0.35
USP28-204ENST00000537642 FNDC11Q9BVV2 318 aa12.84□□□□□ -0.35
USP28-204ENST00000537642 INIPQ9NRY2 104 aa12.84□□□□□ -0.35
USP28-204ENST00000537642 ARL8BQ9NVJ2 186 aa12.84□□□□□ -0.35
USP28-204ENST00000537642 ADA2Q9NZK5 511 aa12.84□□□□□ -0.35
USP28-204ENST00000537642 ARL2BPQ9Y2Y0 163 aa12.84□□□□□ -0.35
USP28-204ENST00000537642 NF1P21359 2839 aa12.84□□□□□ -0.35
USP28-204ENST00000537642 ZANQ9Y493 2812 aa12.84□□□□□ -0.35
USP28-204ENST00000537642 ANK3Q12955 4377 aaKnown RBP12.83□□□□□ -0.35
USP28-204ENST00000537642 CR1P17927 2039 aa12.83□□□□□ -0.36
USP28-204ENST00000537642 IGHV2OR16-5A0A0B4J2B6 119 aa12.83□□□□□ -0.36
USP28-204ENST00000537642 A0A1W2PRG6 482 aa12.83□□□□□ -0.36
USP28-204ENST00000537642 DHHO43323 396 aa12.83□□□□□ -0.36
USP28-204ENST00000537642 IGHG1P01857 330 aa12.83□□□□□ -0.36
USP28-204ENST00000537642 QDPRP09417 244 aa12.83□□□□□ -0.36
USP28-204ENST00000537642 CD79AP11912 226 aa12.83□□□□□ -0.36
USP28-204ENST00000537642 MAKP20794 623 aa12.83□□□□□ -0.36
USP28-204ENST00000537642 PIGFQ07326 219 aa12.83□□□□□ -0.36
USP28-204ENST00000537642 HIST3H3Q16695 136 aa12.83□□□□□ -0.36
USP28-204ENST00000537642 SWI5Q1ZZU3 235 aa12.83□□□□□ -0.36
USP28-204ENST00000537642 GSG1Q2KHT4 349 aa12.83□□□□□ -0.36
USP28-204ENST00000537642 GLYATQ6IB77 296 aa12.83□□□□□ -0.36
USP28-204ENST00000537642 MEX3DQ86XN8 651 aaKnown RBP12.83□□□□□ -0.36
USP28-204ENST00000537642 NRMQ8IXM6 262 aa12.83□□□□□ -0.36
USP28-204ENST00000537642 RNF148Q8N7C7 305 aa12.83□□□□□ -0.36
USP28-204ENST00000537642 OR4F15Q8NGB8 312 aa12.83□□□□□ -0.36
USP28-204ENST00000537642 HTRA1Q92743 480 aa12.83□□□□□ -0.36
USP28-204ENST00000537642 BPIFA2Q96DR5 249 aa12.83□□□□□ -0.36
USP28-204ENST00000537642 FBXO17Q96EF6 278 aa12.83□□□□□ -0.36
USP28-204ENST00000537642 ZNF347Q96SE7 839 aa12.83□□□□□ -0.36
USP28-204ENST00000537642 SEPHS2Q99611 448 aa12.83□□□□□ -0.36
USP28-204ENST00000537642 MRPL13Q9BYD1 178 aaKnown RBP12.83□□□□□ -0.36
USP28-204ENST00000537642 BARX1Q9HBU1 254 aaPredicted RBP12.83□□□□□ -0.36
USP28-204ENST00000537642 CA10Q9NS85 328 aa12.83□□□□□ -0.36
USP28-204ENST00000537642 HIF3AQ9Y2N7 669 aa12.83□□□□□ -0.36
USP28-204ENST00000537642 A0A087WUU8 490 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 HTR3EA5X5Y0 456 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 FAM171A2A8MVW0 826 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 MCIDASD6RGH6 385 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 H7C417 338 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 SSX4O60224 188 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 TRMUO75648 421 aaKnown RBP12.82□□□□□ -0.36
USP28-204ENST00000537642 HEXAP06865 529 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 ACADSP16219 412 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 DAP3P51398 398 aaKnown RBP12.82□□□□□ -0.36
USP28-204ENST00000537642 CLRN1P58418 232 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 MYBPC1Q00872 1141 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 PRKCDQ05655 676 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 CHRNB3Q05901 458 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 ADIPOQQ15848 244 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 ARMC4Q5T2S8 1044 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 VHLLQ6RSH7 139 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 PIWIL3Q7Z3Z3 882 aaKnown RBP12.82□□□□□ -0.36
USP28-204ENST00000537642 SKA3Q8IX90 412 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 SYT14Q8NB59 555 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 FAM156AQ8NDB6 213 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 NOXO1Q8NFA2 376 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 NUP37Q8NFH4 326 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 FGFBP3Q8TAT2 258 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 ACOT11Q8WXI4 607 aaPredicted RBP12.82□□□□□ -0.36
USP28-204ENST00000537642 NANOS1Q8WY41 292 aaKnown RBP12.82□□□□□ -0.36
USP28-204ENST00000537642 MCHR2Q969V1 340 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 MS4A3Q96HJ5 214 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 LRRC37BQ96QE4 947 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 DCAF13Q9NV06 445 aaKnown RBP12.82□□□□□ -0.36
USP28-204ENST00000537642 TMEM38BQ9NVV0 291 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms