RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 TMPRSS11FQ6ZWK6 438 aa8.91□□□□□ -0.98
VPS28-204ENST00000526054 HDDC2Q7Z4H3 204 aa8.91□□□□□ -0.98
VPS28-204ENST00000526054 GABRG1Q8N1C3 465 aa8.91□□□□□ -0.98
VPS28-204ENST00000526054 LINC00471Q8N535 108 aa8.91□□□□□ -0.98
VPS28-204ENST00000526054 ZIC4Q8N9L1 334 aa8.91□□□□□ -0.98
VPS28-204ENST00000526054 OR2T29Q8NH02 315 aa8.91□□□□□ -0.98
VPS28-204ENST00000526054 CANT1Q8WVQ1 401 aa8.91□□□□□ -0.98
VPS28-204ENST00000526054 KISS1RQ969F8 398 aaPredicted RBP8.91□□□□□ -0.98
VPS28-204ENST00000526054 FBXW5Q969U6 566 aa8.91□□□□□ -0.98
VPS28-204ENST00000526054 FAM46AQ96IP4 442 aaKnown RBP8.91□□□□□ -0.98
VPS28-204ENST00000526054 FUZQ9BT04 418 aa8.91□□□□□ -0.98
VPS28-204ENST00000526054 CHID1Q9BWS9 393 aa8.91□□□□□ -0.98
VPS28-204ENST00000526054 HDHD5Q9BXW7 423 aa8.91□□□□□ -0.98
VPS28-204ENST00000526054 REEP1Q9H902 201 aa8.91□□□□□ -0.98
VPS28-204ENST00000526054 NGBQ9NPG2 151 aa8.91□□□□□ -0.98
VPS28-204ENST00000526054 INIPQ9NRY2 104 aa8.91□□□□□ -0.98
VPS28-204ENST00000526054 ASB6Q9NWX5 421 aa8.91□□□□□ -0.98
VPS28-204ENST00000526054 MALT1Q9UDY8 824 aa8.91□□□□□ -0.98
VPS28-204ENST00000526054 HIF3AQ9Y2N7 669 aa8.91□□□□□ -0.98
VPS28-204ENST00000526054 LYVE1Q9Y5Y7 322 aa8.91□□□□□ -0.98
VPS28-204ENST00000526054 A0A1W2PRG6 482 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 ZNF726A6NNF4 738 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 MCIDASD6RGH6 385 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 ZNF587BE7ETH6 402 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 GNGT2O14610 69 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 OR10H3O60404 316 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 FKBP6O75344 327 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 CST1P01037 141 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 CD3EP07766 207 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 HLA-DOBP13765 273 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 IFNGR1P15260 489 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 COX5AP20674 150 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 MAKP20794 623 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 EDNRAP25101 427 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 NTF4P34130 210 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 AQP2P41181 271 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 OMPP47874 163 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 DAP3P51398 398 aaKnown RBP8.9□□□□□ -0.98
VPS28-204ENST00000526054 ELF3P78545 371 aaPredicted RBP8.9□□□□□ -0.98
VPS28-204ENST00000526054 LSM11P83369 360 aaKnown RBP eCLIP8.9□□□□□ -0.98
VPS28-204ENST00000526054 FAPQ12884 760 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 ITGADQ13349 1161 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 TNK1Q13470 666 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 SEC23BQ15437 767 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 ETFDHQ16134 617 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 CLEC12BQ2HXU8 276 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 ALG10Q5BKT4 473 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 SFRP5Q5T4F7 317 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 TSPO2Q5TGU0 170 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 SLC35D2Q76EJ3 337 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 OAFQ86UD1 273 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 C10orf67Q8IYJ2 551 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 OR13C2Q8NGS9 318 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 STMN2Q93045 179 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 GTPBP3Q969Y2 492 aaKnown RBP8.9□□□□□ -0.98
VPS28-204ENST00000526054 ADAD1Q96M93 576 aaKnown RBP8.9□□□□□ -0.98
VPS28-204ENST00000526054 OR2M2Q96R28 347 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 MDFIQ99750 246 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 USB1Q9BQ65 265 aaKnown RBP8.9□□□□□ -0.98
VPS28-204ENST00000526054 LINC00470Q9BZP3 86 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 DENND2DQ9H6A0 471 aaPredicted RBP8.9□□□□□ -0.98
VPS28-204ENST00000526054 ESRP2Q9H6T0 727 aaKnown RBP8.9□□□□□ -0.98
VPS28-204ENST00000526054 B3GAT2Q9NPZ5 323 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 SLC7A10Q9NS82 523 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 MED29Q9NX70 200 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 TAS2R16Q9NYV7 291 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 TAS2R5Q9NYW4 299 aa8.9□□□□□ -0.98
VPS28-204ENST00000526054 STX18Q9P2W9 335 aaKnown RBP8.9□□□□□ -0.98
VPS28-204ENST00000526054 SAMHD1Q9Y3Z3 626 aaKnown RBP8.9□□□□□ -0.98
VPS28-204ENST00000526054 CHD3Q12873 2000 aaKnown RBP8.9□□□□□ -0.99
VPS28-204ENST00000526054 CR1P17927 2039 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 TRAV27A0A087WT01 109 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 CIB4A0PJX0 185 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 SLC35F4A4IF30 521 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 NPIPB13A6NJU9 1138 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 NPIPB4C9JG80 1138 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 ZNF432O94892 652 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 CCNB2O95067 398 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 BCL10O95999 233 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 F13BP05160 661 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 TSPAN19P0C672 248 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 IGHV1-2P23083 117 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 LIMS1P48059 325 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 ERFP50548 548 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 HMGA2P52926 109 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 BIDP55957 195 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 PRPS1P60891 318 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 ACTR3P61158 418 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 TGFBR3Q03167 851 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 KPNB1Q14974 876 aaKnown RBP8.89□□□□□ -0.99
VPS28-204ENST00000526054 TAB1Q15750 504 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 ZBED5Q49AG3 693 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 NCMAPQ5T1S8 102 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 HMBOX1Q6NT76 420 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 ADAM5Q6NVV9 412 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 BHLHA15Q7RTS1 189 aaPredicted RBP8.89□□□□□ -0.99
VPS28-204ENST00000526054 SSX8Q7RTT4 187 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 MEX3DQ86XN8 651 aaKnown RBP8.89□□□□□ -0.99
VPS28-204ENST00000526054 GPR137CQ8N3F9 429 aa8.89□□□□□ -0.99
VPS28-204ENST00000526054 KBTBD8Q8NFY9 601 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms