RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 TMEM45BQ96B21 275 aa13.56□□□□□ -0.24
LSM1-203ENST00000520755 HRASLS5Q96KN8 279 aa13.56□□□□□ -0.24
LSM1-203ENST00000520755 ERMAPQ96PL5 475 aaPredicted RBP13.56□□□□□ -0.24
LSM1-203ENST00000520755 ADI1Q9BV57 179 aa13.56□□□□□ -0.24
LSM1-203ENST00000520755 EMC6Q9BV81 110 aa13.56□□□□□ -0.24
LSM1-203ENST00000520755 FAM118AQ9NWS6 357 aa13.56□□□□□ -0.24
LSM1-203ENST00000520755 ZNF346Q9UL40 294 aaKnown RBP13.56□□□□□ -0.24
LSM1-203ENST00000520755 NDRG4Q9ULP0 352 aaKnown RBP13.56□□□□□ -0.24
LSM1-203ENST00000520755 NOSIPQ9Y314 301 aaKnown RBP13.56□□□□□ -0.24
LSM1-203ENST00000520755 A0A1W2PRG6 482 aa13.55□□□□□ -0.24
LSM1-203ENST00000520755 SLC16A6O15403 523 aa13.55□□□□□ -0.24
LSM1-203ENST00000520755 SLC2A10O95528 541 aa13.55□□□□□ -0.24
LSM1-203ENST00000520755 SDHAP31040 664 aa13.55□□□□□ -0.24
LSM1-203ENST00000520755 GRK5P34947 590 aa13.55□□□□□ -0.24
LSM1-203ENST00000520755 ASCL1P50553 236 aa13.55□□□□□ -0.24
LSM1-203ENST00000520755 BIDP55957 195 aa13.55□□□□□ -0.24
LSM1-203ENST00000520755 RPL27P61353 136 aaKnown RBP13.55□□□□□ -0.24
LSM1-203ENST00000520755 KRR1Q13601 381 aaKnown RBP13.55□□□□□ -0.24
LSM1-203ENST00000520755 C1DQ13901 141 aaKnown RBP13.55□□□□□ -0.24
LSM1-203ENST00000520755 TMEM123Q8N131 208 aa13.55□□□□□ -0.24
LSM1-203ENST00000520755 ZNF610Q8N9Z0 462 aa13.55□□□□□ -0.24
LSM1-203ENST00000520755 HDAC2Q92769 488 aaKnown RBP13.55□□□□□ -0.24
LSM1-203ENST00000520755 OR2M2Q96R28 347 aa13.55□□□□□ -0.24
LSM1-203ENST00000520755 NDEL1Q9GZM8 345 aa13.55□□□□□ -0.24
LSM1-203ENST00000520755 BAIAP2Q9UQB8 552 aa13.55□□□□□ -0.24
LSM1-203ENST00000520755 SLC35F4A4IF30 521 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 PRSS44E7EML9 344 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 H7C1C5 153 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 MSTNO14793 375 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 SURF4O15260 269 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 MRPL33O75394 65 aaKnown RBP13.54□□□□□ -0.24
LSM1-203ENST00000520755 CLDN1O95832 211 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 CLIC3O95833 236 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 CGAP01215 116 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 GNAO1P09471 354 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 CD8BP10966 210 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 HIST1H1CP16403 213 aaKnown RBP13.54□□□□□ -0.24
LSM1-203ENST00000520755 GGT2P36268 569 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 CAPGP40121 348 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 SELENOPP49908 381 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 DAP3P51398 398 aaKnown RBP13.54□□□□□ -0.24
LSM1-203ENST00000520755 RPS6KA3P51812 740 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 LCN6P62502 163 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 LGALS3BPQ08380 585 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 DBPQ10586 325 aaPredicted RBP13.54□□□□□ -0.24
LSM1-203ENST00000520755 SLC35F1Q5T1Q4 408 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 C6orf52Q5T4I8 152 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 GPR139Q6DWJ6 353 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 CASP12Q6UXS9 341 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 ZNF100Q8IYN0 542 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 ARIH2OSQ8N7S6 290 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 CYGBQ8WWM9 190 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 TFAP2CQ92754 450 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 RBM24Q9BX46 236 aaKnown RBP13.54□□□□□ -0.24
LSM1-203ENST00000520755 PLSCR4Q9NRQ2 329 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 JKAMPQ9P055 326 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 RCE1Q9Y256 329 aa13.54□□□□□ -0.24
LSM1-203ENST00000520755 LOC100130705A0A1B0GUX0 176 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 A8MXE2 369 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 TRMUO75648 421 aaKnown RBP13.53□□□□□ -0.24
LSM1-203ENST00000520755 BCL10O95999 233 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 PGA4P0DJD7 388 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 PGA3P0DJD8 388 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 ACVR1BP36896 505 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 CDKN2AP42771 156 aaKnown RBP13.53□□□□□ -0.24
LSM1-203ENST00000520755 MYBPC1Q00872 1141 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 TFF3Q07654 80 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.53□□□□□ -0.24
LSM1-203ENST00000520755 CAMK2DQ13557 499 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 KEAP1Q14145 624 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 TAF11Q15544 211 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 PHYHD1Q5SRE7 291 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 TFAP2EQ6VUC0 442 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 USP51Q70EK9 711 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 AAED1Q7RTV5 226 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 DHRSXQ8N5I4 330 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 SDR9C7Q8NEX9 313 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 NOXO1Q8NFA2 376 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 OR4K13Q8NH42 304 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 OR6X1Q8NH79 312 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 APH1AQ96BI3 265 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 NMD3Q96D46 503 aaKnown RBP13.53□□□□□ -0.24
LSM1-203ENST00000520755 LRRC46Q96FV0 321 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 KCNK17Q96T54 332 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 DDOQ99489 341 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 ZNF184Q99676 751 aaPredicted RBP13.53□□□□□ -0.24
LSM1-203ENST00000520755 MRPL13Q9BYD1 178 aaKnown RBP13.53□□□□□ -0.24
LSM1-203ENST00000520755 CMC2Q9NRP2 79 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 GRHPRQ9UBQ7 328 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 PRSS50Q9UI38 385 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 COL12A1Q99715 3063 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 DOPEY2Q9Y3R5 2298 aa13.53□□□□□ -0.24
LSM1-203ENST00000520755 SPTBN1Q01082 2364 aaKnown RBP13.53□□□□□ -0.24
LSM1-203ENST00000520755 DOPEY1Q5JWR5 2465 aa13.52□□□□□ -0.24
LSM1-203ENST00000520755 H0YAE9 185 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 C19orf84I3L1E1 186 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 IDH3BO43837 385 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 PRKYO43930 277 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 IGHV3-9P01782 118 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 ACADSP16219 412 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms