RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 SLC25A15Q9Y619 301 aa5.23□□□□□ -1.57
NUP54-215ENST00000514313 TRAV25A0A0B4J276 109 aa5.22□□□□□ -1.57
NUP54-215ENST00000514313 A8MUA0 341 aa5.22□□□□□ -1.57
NUP54-215ENST00000514313 L7N2F9 121 aa5.22□□□□□ -1.57
NUP54-215ENST00000514313 SIRPB1O00241 398 aa5.22□□□□□ -1.57
NUP54-215ENST00000514313 CLPXO76031 633 aa5.22□□□□□ -1.57
NUP54-215ENST00000514313 CLIC3O95833 236 aa5.22□□□□□ -1.57
NUP54-215ENST00000514313 RALBP11234 206 aa5.22□□□□□ -1.57
NUP54-215ENST00000514313 ICAM2P13598 275 aa5.22□□□□□ -1.57
NUP54-215ENST00000514313 STOMP27105 288 aa5.22□□□□□ -1.57
NUP54-215ENST00000514313 CD1BP29016 333 aa5.22□□□□□ -1.57
NUP54-215ENST00000514313 CCT6AP40227 531 aaKnown RBP5.22□□□□□ -1.57
NUP54-215ENST00000514313 UQCRFS1P47985 274 aa5.22□□□□□ -1.57
NUP54-215ENST00000514313 ACTA2P62736 377 aa5.22□□□□□ -1.57
NUP54-215ENST00000514313 ACTG2P63267 376 aa5.22□□□□□ -1.57
NUP54-215ENST00000514313 ACTC1P68032 377 aa5.22□□□□□ -1.57
NUP54-215ENST00000514313 ACTA1P68133 377 aa5.22□□□□□ -1.57
NUP54-215ENST00000514313 ANKRD26P1Q6NSI1 321 aa5.22□□□□□ -1.57
NUP54-215ENST00000514313 CERS6Q6ZMG9 384 aa5.22□□□□□ -1.57
NUP54-215ENST00000514313 OTUD6AQ7L8S5 288 aa5.22□□□□□ -1.57
NUP54-215ENST00000514313 THOC6Q86W42 341 aaKnown RBP5.22□□□□□ -1.57
NUP54-215ENST00000514313 IQCKQ8N0W5 287 aa5.22□□□□□ -1.57
NUP54-215ENST00000514313 PQLC3Q8N755 202 aa5.22□□□□□ -1.57
NUP54-215ENST00000514313 HSD17B11Q8NBQ5 300 aa5.22□□□□□ -1.57
NUP54-215ENST00000514313 CCL28Q9NRJ3 127 aa5.22□□□□□ -1.57
NUP54-215ENST00000514313 MSH6P52701 1360 aa5.21□□□□□ -1.58
NUP54-215ENST00000514313 IGLV3-10A0A075B6K4 115 aa5.21□□□□□ -1.58
NUP54-215ENST00000514313 IGKV1D-13A0A0B4J2D9 117 aa5.21□□□□□ -1.58
NUP54-215ENST00000514313 FAM231BA6NCW3 169 aa5.21□□□□□ -1.58
NUP54-215ENST00000514313 KRTAP4-16G5E9R7 235 aaPredicted RBP5.21□□□□□ -1.58
NUP54-215ENST00000514313 GOLGA8TH3BQL2 631 aa5.21□□□□□ -1.58
NUP54-215ENST00000514313 CDC7O00311 574 aa5.21□□□□□ -1.58
NUP54-215ENST00000514313 AKR7A2O43488 359 aa5.21□□□□□ -1.58
NUP54-215ENST00000514313 EIF3GO75821 320 aaKnown RBP eCLIP5.21□□□□□ -1.58
NUP54-215ENST00000514313 BBOX1O75936 387 aa5.21□□□□□ -1.58
NUP54-215ENST00000514313 ALDOBP05062 364 aa5.21□□□□□ -1.58
NUP54-215ENST00000514313 IGKV1-13P0DP09 117 aa5.21□□□□□ -1.58
NUP54-215ENST00000514313 CCNB1P14635 433 aa5.21□□□□□ -1.58
NUP54-215ENST00000514313 SLC1A1P43005 524 aa5.21□□□□□ -1.58
NUP54-215ENST00000514313 RFX3P48380 749 aa5.21□□□□□ -1.58
NUP54-215ENST00000514313 RORCP51449 518 aa5.21□□□□□ -1.58
NUP54-215ENST00000514313 SSR4P51571 173 aa5.21□□□□□ -1.58
NUP54-215ENST00000514313 ZNF92Q03936 586 aa5.21□□□□□ -1.58
NUP54-215ENST00000514313 PAGE3Q5JUK9 113 aa5.21□□□□□ -1.58
NUP54-215ENST00000514313 TWF2Q6IBS0 349 aaKnown RBP5.21□□□□□ -1.58
NUP54-215ENST00000514313 RNF165Q6ZSG1 346 aa5.21□□□□□ -1.58
NUP54-215ENST00000514313 CXorf40AQ8TE69 158 aa5.21□□□□□ -1.58
NUP54-215ENST00000514313 FRAT1Q92837 279 aaPredicted RBP5.21□□□□□ -1.58
NUP54-215ENST00000514313 TMEM54Q969K7 222 aa5.21□□□□□ -1.58
NUP54-215ENST00000514313 SGK3Q96BR1 496 aa5.21□□□□□ -1.58
NUP54-215ENST00000514313 DNTTIP1Q9H147 329 aa5.21□□□□□ -1.58
NUP54-215ENST00000514313 MMP24Q9Y5R2 645 aa5.21□□□□□ -1.58
NUP54-215ENST00000514313 PLEKHG1Q9ULL1 1385 aa5.2□□□□□ -1.58
NUP54-215ENST00000514313 TRBV9A0A0B4J1U6 114 aa5.2□□□□□ -1.58
NUP54-215ENST00000514313 A0A1B0GTQ1 180 aa5.2□□□□□ -1.58
NUP54-215ENST00000514313 ZNF726A6NNF4 738 aa5.2□□□□□ -1.58
NUP54-215ENST00000514313 SPECC1L-ADORA2AF8WAN1 911 aa5.2□□□□□ -1.58
NUP54-215ENST00000514313 NPIPB7O75200 414 aa5.2□□□□□ -1.58
NUP54-215ENST00000514313 EIF2S2P20042 333 aaKnown RBP5.2□□□□□ -1.58
NUP54-215ENST00000514313 FOXN2P32314 431 aa5.2□□□□□ -1.58
NUP54-215ENST00000514313 TIMM10P62072 90 aa5.2□□□□□ -1.58
NUP54-215ENST00000514313 REG3AQ06141 175 aa5.2□□□□□ -1.58
NUP54-215ENST00000514313 PIP5KL1Q5T9C9 394 aa5.2□□□□□ -1.58
NUP54-215ENST00000514313 LCN12Q6JVE5 192 aa5.2□□□□□ -1.58
NUP54-215ENST00000514313 C20orf203Q8NBC4 194 aa5.2□□□□□ -1.58
NUP54-215ENST00000514313 IQCGQ9H095 443 aaKnown RBP5.2□□□□□ -1.58
NUP54-215ENST00000514313 UGT1A7Q9HAW7 530 aa5.2□□□□□ -1.58
NUP54-215ENST00000514313 UGT1A8Q9HAW9 530 aa5.2□□□□□ -1.58
NUP54-215ENST00000514313 MRPS30Q9NP92 439 aaKnown RBP5.2□□□□□ -1.58
NUP54-215ENST00000514313 AHSPQ9NZD4 102 aa5.2□□□□□ -1.58
NUP54-215ENST00000514313 ING4Q9UNL4 249 aa5.2□□□□□ -1.58
NUP54-215ENST00000514313 MRPS12O15235 138 aaKnown RBP5.19□□□□□ -1.58
NUP54-215ENST00000514313 TNFSF13O75888 250 aa5.19□□□□□ -1.58
NUP54-215ENST00000514313 LY6G6DO95868 133 aa5.19□□□□□ -1.58
NUP54-215ENST00000514313 FOLR1P15328 257 aa5.19□□□□□ -1.58
NUP54-215ENST00000514313 FUT3P21217 361 aa5.19□□□□□ -1.58
NUP54-215ENST00000514313 BCKDHBP21953 392 aa5.19□□□□□ -1.58
NUP54-215ENST00000514313 AQP2P41181 271 aa5.19□□□□□ -1.58
NUP54-215ENST00000514313 MAGEA1P43355 309 aa5.19□□□□□ -1.58
NUP54-215ENST00000514313 TAF6P49848 677 aa5.19□□□□□ -1.58
NUP54-215ENST00000514313 UGT2B15P54855 530 aa5.19□□□□□ -1.58
NUP54-215ENST00000514313 PAX5Q02548 391 aa5.19□□□□□ -1.58
NUP54-215ENST00000514313 IRF8Q02556 426 aa5.19□□□□□ -1.58
NUP54-215ENST00000514313 SPAG1Q07617 926 aa5.19□□□□□ -1.58
NUP54-215ENST00000514313 ITIH4Q14624 930 aa5.19□□□□□ -1.58
NUP54-215ENST00000514313 ZNF630Q2M218 657 aaPredicted RBP5.19□□□□□ -1.58
NUP54-215ENST00000514313 CCDC14Q49A88 953 aa5.19□□□□□ -1.58
NUP54-215ENST00000514313 FBXL22Q6P050 247 aa5.19□□□□□ -1.58
NUP54-215ENST00000514313 MMAAQ8IVH4 418 aaKnown RBP5.19□□□□□ -1.58
NUP54-215ENST00000514313 FAM184AQ8NB25 1140 aa5.19□□□□□ -1.58
NUP54-215ENST00000514313 ZNF502Q8TBZ5 544 aa5.19□□□□□ -1.58
NUP54-215ENST00000514313 SDR42E1Q8WUS8 393 aa5.19□□□□□ -1.58
NUP54-215ENST00000514313 CAPSLQ8WWF8 208 aa5.19□□□□□ -1.58
NUP54-215ENST00000514313 C8orf44Q96CB5 159 aa5.19□□□□□ -1.58
NUP54-215ENST00000514313 DUS3LQ96G46 650 aaKnown RBP5.19□□□□□ -1.58
NUP54-215ENST00000514313 PKNOX2Q96KN3 472 aa5.19□□□□□ -1.58
NUP54-215ENST00000514313 GSDMAQ96QA5 445 aa5.19□□□□□ -1.58
NUP54-215ENST00000514313 YTHDF1Q9BYJ9 559 aaKnown RBP5.19□□□□□ -1.58
NUP54-215ENST00000514313 OR11A1Q9GZK7 315 aa5.19□□□□□ -1.58
NUP54-215ENST00000514313 ELOVL6Q9H5J4 265 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms